PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g049320.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 219aa MW: 25439 Da PI: 6.7918

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g049320.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.4	2.1e-26	107	157	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl Csa02g049320.1 107 QDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 157 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.962	93	178	IPR003035	RWP-RK domain
Pfam	PF02042	9.5E-22	110	157	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MENDYDPDSL YDMLNKLPPL ESLLNIEDLK PTRGLHFQFQ YESFEDLFES IDMTNIIPSD 60 DIDMPAQEPY ISSGSSSPLA VENDCPSSNV RSEKRTVKKR NSKKKRQDKL EMSEIKQFFD 120 RPIMKAAKEL NVGLTVLKKR CRELGIYRWP HRKLKSLNSL INNLKSVGME EEVKNLEEHR 180 VLIEQEPDAE LSDGTKKLRQ ACFKANYKRR KSLADDYY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g049320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445487.1	1e-159	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	1e-111	RKD4_ARATH; Protein RKD4
TrEMBL	R0GE40	1e-125	R0GE40_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010445487.1	1e-159	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-99	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]