PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g052200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 140aa    MW: 16269.6 Da    PI: 9.9161
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g052200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind58.42e-1828109291
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                     F kkly++++d+++++++swseng+s++v++e+ef + vLpk+ + +++a FvR L   gFkk  ++e+        we+  + F +g+ 
  Csa02g052200.1  28 FRKKLYKMVDDPTTDSIVSWSENGKSLIVWNESEFCRGVLPKFSQYKEMAPFVRRLGNMGFKKKIESEH--------WEYGSDDFVRGHP 109
                     889**********************************************************99877773........8999888888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-2320110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-1824121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.89E-2125110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-102851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-1928110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-106678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-107991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDTGRAFLDL KRLGMDRDKN SKYRCRHFRK KLYKMVDDPT TDSIVSWSEN GKSLIVWNES  60
EFCRGVLPKF SQYKEMAPFV RRLGNMGFKK KIESEHWEYG SDDFVRGHPE PDLPPDAVRA  120
RLKELALASR RGQADHSFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-1328962088Heat shock factor protein 1
5d5u_B1e-1328962997Heat shock factor protein 1
5d5v_B1e-1328962997Heat shock factor protein 1
5d5v_D1e-1328962997Heat shock factor protein 1
5hdg_A9e-1428961078Heat shock factor protein 1
5hdn_A9e-1428961078Heat shock factor protein 1
5hdn_B9e-1428961078Heat shock factor protein 1
5hdn_C9e-1428961078Heat shock factor protein 1
5hdn_D9e-1428961078Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g052200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873596.22e-28heat stress transcription factor A-4a
TrEMBLR0GQ125e-58R0GQ12_9BRAS; Uncharacterized protein
STRINGBostr.3359s0057.1.p2e-58(Boechera stricta)
STRINGXP_006281542.18e-59(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.13e-21heat shock transcription factor A1E