PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g055270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 233aa    MW: 26699.9 Da    PI: 10.1628
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g055270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.24.7e-1342127391
          DUF573   3 fqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                     +qrl + ee ei +LqG++d++a tgk+p+ d+++ +ef+ +  +++ s +++veK+ +LKk   +++++    keps s   +qk+ +l
  Csa02g055270.1  42 SQRLeYVEEEEIGVLQGILDCHALTGKNPFVDMKETFEFMTEYTNLE-SFDEYVEKMNSLKKLLMDQRRN---AKEPSTSDCYYQKVSKL 127
                     6888899**********************************999998.56789********988888877...88888888888888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTILNCTITQ LTGKKRKNEG TLLANKDVNA KRSKKVVKKV CSQRLEYVEE EEIGVLQGIL  60
DCHALTGKNP FVDMKETFEF MTEYTNLESF DEYVEKMNSL KKLLMDQRRN AKEPSTSDCY  120
YQKVSKLLGS AVEKPKRSKR VVKPKEEKQT VMSREGEKWF ENATLVGQVV SRGVDEDSLK  180
SKWDAVPTAK KNKMDQKWRI LRAKERESMP QKSKFFKDLV SVIVAASSSR LM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g055270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086367.11e-139PREDICTED: probable transcription factor At4g00232
TrEMBLR0I4G62e-73R0I4G6_9BRAS; Uncharacterized protein
STRINGXP_010490439.11e-107(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16691712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.17e-19DNA-binding storekeeper protein-related transcriptional regulator