PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g058180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 555aa    MW: 61452.5 Da    PI: 7.2033
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g058180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31194251260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d+ ++ei+Y+g+H+h+k
  Csa02g058180.1 194 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGLITEIIYKGTHDHPK 251
                     8****************************************.***************85 PP
2WRKY106.31.5e-33365423159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Csa02g058180.1 365 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 423
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.883188252IPR003657WRKY domain
SuperFamilySSF1182901.24E-24190252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-26192252IPR003657WRKY domain
SMARTSM007746.7E-33193251IPR003657WRKY domain
PfamPF031061.5E-23194250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37350425IPR003657WRKY domain
SuperFamilySSF1182902.22E-29357425IPR003657WRKY domain
PROSITE profilePS5081138.664360425IPR003657WRKY domain
SMARTSM007748.6E-39365424IPR003657WRKY domain
PfamPF031065.1E-26366423IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDPDDVSYHR KEFRRDCAGG ARYKLMSPAK LPISRSSCIT IPPGLSPTSF LESPVLLSNI  60
KAEPSPTTGS LFKPQAVHAS SSPYRGSSSS TIHQNIFQEQ HSTDFEFRPP PPASKMFCAE  120
LDKRTSESPL QFQSHSFKHS PSSLTEVAAS STETSRPHQT TPSLSDIPER SDPDESAQTS  180
QNDSKASAPY ILADDGYNWR KYGQKHVKGS EFPRSYYKCT HPNCEVKKLF ERSYDGLITE  240
IIYKGTHDHP KPQPSRRNSG GLVMPAQEER LDKHSSLNGR DEKASNFYNL SPPLEQNGNP  300
DVSPVSANDD GGDVAMSNKN NDDMDDNDPI SKRRRLDGAM EITPLVKPIR EPRVVVQTLS  360
EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTATGCPVRK HVERASHDPK AVITTYEGKH  420
NHDVPTARSN NNNHDVSVPR FRTEETTDTI SLDLGVGIAS GGPDDHTSNE HPHPHQQQQH  480
TRSECLHQTQ TNGTAGFRFV HGPPMGSYYG NSLNAGINHQ YNGSRETTHE AQTGDISSSS  540
YPCPHNIGRI QSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36192425877Probable WRKY transcription factor 4
2lex_A2e-36192425877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331335KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g058180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449897.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GDB80.0R0GDB8_9BRAS; Uncharacterized protein
STRINGXP_010449897.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein