PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g059100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 281aa    MW: 29743.2 Da    PI: 6.7505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g059100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053124146123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksFs+   L  H  +H
  Csa02g059100.1 124 HVCVTCNKSFSSYQALGGHRASH 146
                     79***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-7123146No hitNo description
PfamPF139121.4E-10124148IPR007087Zinc finger, C2H2
SMARTSM003550.38124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-7188215No hitNo description
PfamPF139124.2E-13193216IPR007087Zinc finger, C2H2
SMARTSM003550.4193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787193215IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGLLGTINRL DPSGSALVIT MQQAIMSLVV VNQGSVIIVD NAGKNKQGAT TAEEAANLNV  60
AETYNSHSVE EKDLEMVKKR KKKKKSLSEM EKESSSTHHD HHQLAVVAAA AEEGGAAAGV  120
REKHVCVTCN KSFSSYQALG GHRASHNKVR VLENHLARAN AEASLLGIEA IVTGLASAQG  180
SNTSISSSNN GDHICNICHR SFPTGQALGG HKRCHWTGPV STEAATVAPT AAPTTAPAEA  240
SSSQAQATEI VQEVKKLKRS FLEFDLNELP PHEDEEEERV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781KKRKK
27884KRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g059100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230290.0AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1.
GenBankAB4937940.0AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476288.10.0PREDICTED: zinc finger protein 1-like
TrEMBLR0EWN01e-108R0EWN0_9BRAS; Uncharacterized protein
STRINGXP_010476288.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-64C2H2 family protein