PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g059180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 796aa    MW: 86640 Da    PI: 7.0541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g059180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31370427260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Csa02g059180.1 370 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 427
                     8****************************************.***************85 PP
2WRKY103.61.1e-32590648159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Csa02g059180.1 590 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 648
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28365428IPR003657WRKY domain
SuperFamilySSF1182906.02E-25367428IPR003657WRKY domain
SMARTSM007741.6E-34369427IPR003657WRKY domain
PfamPF031067.1E-24370425IPR003657WRKY domain
PROSITE profilePS5081123.25370428IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36575650IPR003657WRKY domain
SuperFamilySSF1182901.96E-28582650IPR003657WRKY domain
PROSITE profilePS5081138.136585650IPR003657WRKY domain
SMARTSM007741.8E-37590649IPR003657WRKY domain
PfamPF031061.1E-24591648IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
LGFFFFVRPR RKKKNRERKE KDTVRRGHSL SLSLGCEKKL SLSVLNWDPG RVGFRVWWSD  60
HRAHSWMLAA ELKVSVCGCG GCDGVSGSCF SINQEFHQSL IIDSVKFFDP KCPGTLFSSV  120
IGEGNNSSKP VLERELSLNH GQVMGVEEDT TTVNHNNDSS SLTYVSRGGG LCERIAARAG  180
FNAPRLNTES IRSNTNFSID SGRRSPCLTI SSPGLSPATL LESPVFLTNP MAQPSPTTGK  240
FPFLPGFNSN ALSSDNAKDE FFDDIGASFT FQSVSRSSSS FFQGTTEMMS VDYGNYNNRS  300
SHQPAEEDVK PGSLNIESSN LYGVQTDPSG QNKSSDATTT NTGLETVDHQ EEEEDQRRGG  360
DSMVGGAPAE DGYNWRKYGQ KLVKGSEYPR SYYKCTNPNC QVKKKVERSR EGHITEIIYK  420
GAHNHSKPLP NRRSGMQTDG TEQVEQQQQQ QQQQQQRDSA GTWVSCNNTQ QQGGSNVNNV  480
EEGTTGFEYG NQSGSIQAQT GGQYESNDAV VVVDTSSTFS NDEDEDDRGT HGSVSLGCDG  540
GGGRSGEGEG EESESKRRKL EAYAAEMSGA TRAIREPRVV VQTTSDVDIL DDGYRWRKYG  600
QKVVKGNPNP RSYYKCTAPG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHGGG  660
GTSNGSSGGS AAQSHHYHNG HHHSEQPRGR FERQVTATNQ SPYGRGPFSF QPHLGPPSGY  720
AFGLGQTGLA NLSIPGLAFG QGKMPGMPHP YMTQPSVGNM SEAMMQRGGM EPKAEPVSDS  780
GQSVYNQIMS RLPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36370651878Probable WRKY transcription factor 4
2lex_A1e-36370651878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1711RPRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g059180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183080.0AF418308.1 Arabidopsis thaliana WRKY transcription factor 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450884.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLR0EV690.0R0EV69_9BRAS; Uncharacterized protein
STRINGXP_010450884.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]