PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g061290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 741aa    MW: 81065.5 Da    PI: 6.2262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g061290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06479499525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++f   G+C++Gd+C F+H
  Csa02g061290.1 479 PCNNFITKGFCHRGDSCLFSH 499
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-6420445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187420447IPR000571Zinc finger, CCCH-type
SMARTSM003560.016421446IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4424445IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025449475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934449476IPR000571Zinc finger, CCCH-type
SMARTSM003562.7477501IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6478503IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.789479502IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
GALLNNQRRC LFPSSKTYES STATKRPFPP ANGESKVTVS SPFLDYSPEE TMESSVATFP  60
NRRKHLPNRT YRSLIHHLCS SFDREPRVSL ATPAVLQELV LRTDISQASP GETCKPPENS  120
PVVEPRSNGV SDESRGEKVE TISQEKILML GDVFDGIDLQ DATVSSRHKD FFDDFELMIN  180
GSQGFVPESC VNIFEALDVN DYNGDGIVAS LDDISKQPLD IVENVVEKPD IATEVQVEPV  240
ESDKKAEEVP KPAEVISSGV LEACNEIVQR EMELEKPVDD STQVLVDSVP VFVEDDDVEE  300
GEISGDENDD MLVGDDEPVV RLEESHVSEE VIGNSHLTSY ESFEKKLVVE VSNVDNRAKK  360
CDQIFSDEAK NNPGTSIKKR SAPSKDAKAR KRAKDRKKRA QERIALGVKK LKLKPVAPKP  420
KPIKYCRHYI KGRCHEGDKC KFSHDIIPET KSSPCCYFAT QSCMKGDDCP YDHDLSKYPC  480
NNFITKGFCH RGDSCLFSHK GTPQSASDTS NVNVTASSNV NVTASSTNIA AASFSPQKTN  540
KQSVREAIAR IPAIQARVSS SVAFLKPLGQ SNQRNSSDAS SSKINEHAKP PQVPPLRKPS  600
VAPKGMSFLS SDSTVKPSPA SKPNTDNSDN QTLKQSQQGS FLPVVPPKGI SFLSVNREPQ  660
EPASSRNLKT TPNSHIQSSL HSAMKLAAEF ESAKVERRSN EPVEAINKGD GKVNTSVTRN  720
SGNVSSQILE FLSSFSHGKN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377398KKRSAPSKDAKARKRAKDRKKR
2389411RKRAKDRKKRAQERIALGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g061290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240351e-111AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026881e-111CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451619.10.0PREDICTED: zinc finger CCCH domain-containing protein 65-like
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLR0EV460.0R0EV46_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010451619.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516