PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g062640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 669aa    MW: 74107 Da    PI: 5.4968
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g062640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.51.7e-29201254155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  Csa02g062640.1 201 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQKYRL 254
                     79*******************.********************************8 PP
2Response_reg66.89.6e-23201271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+e+   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + + +  G
  Csa02g062640.1  20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESRKALEMLRENSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHG 111
                     799********************.***************999999******************985344..57********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+  +el +
  Csa02g062640.1 112 ACDYLVKPVGLKELQN 127
                     **********999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.3E-1751667IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.1E-3317153No hitNo description
SuperFamilySSF521722.42E-3017135IPR011006CheY-like superfamily
SMARTSM004481.4E-2618129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.83419133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2020127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.93E-1942132No hitNo description
PROSITE profilePS5129411.643198257IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-30199259IPR009057Homeodomain-like
SuperFamilySSF466892.78E-20199258IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26201254IPR006447Myb domain, plants
PfamPF002493.6E-9203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MELKSTADGR NDKFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES RKALEMLREN  60
SNMFDLVISD VEMPDTDGFK LLEIGLEMDL PVIMLSAHSD YDSVMKGIIH GACDYLVKPV  120
GLKELQNIWH HVVKKNIKSY AKTIGPSRQL LPPSESDLVP SVSKKRKEKV NDSGDEDDSD  180
RDEDDGDGSE QDGDESGARK KPRVVWSQEL HQKFVNAVQQ LGLDKAVPKK ILDLMNIEGL  240
TRENVASHLQ KYRLYLKKID EGQQQNMTPD AFGTRDSSYF HMAQLDGFRD FTGTRQLPSS  300
GLLSRSHLTK LQPHMYPSVN LQGMNSSSFI QQGHHQSSSN SANPFGTYHS TLAPRIQNVN  360
LFQRTSSPLE PLQFPRSKCS AYMGDFKSIG DRAIGGSFLD SCMPFGSSST SLPSASSNTL  420
MSQANYTQPL HTATSGNQSC IEGTMSDSAS QNISVQGLSR FPSQSWQGNL NTTRFLSNSI  480
PMNHAFLPDQ VTCEGNNLGD CTSLVSAENP GGEMQCEPQL LGGFMQNMNP IDGQKWEQQN  540
CSMLNSTFGN VEYPLPGDNM VFRGNNASRR DNMVFRGNNA TRSKGLDVSL MSPIDNSANV  600
NSQEEYVGKP STMVDPEMKL GKAENGHVDN QNQHDVFDDI MNEMMKQEEN NGMVSVAARF  660
GFDSFPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24198259263ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g062640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453160.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_010453169.10.0PREDICTED: two-component response regulator ARR18-like
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0EV990.0R0EV99_9BRAS; Two-component response regulator
STRINGXP_010453160.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18