PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g064550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 235aa    MW: 25584.6 Da    PI: 8.7972
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g064550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.4e-1587131347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   Csa02g064550.1  87 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 131
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.33128IPR017884SANT domain
PROSITE profilePS5129420.77280136IPR017930Myb domain
SuperFamilySSF466894.81E-1782135IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1783135IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.3E-1384131IPR009057Homeodomain-like
SMARTSM007173.2E-1384134IPR001005SANT/Myb domain
CDDcd001675.99E-1287132No hitNo description
PfamPF002493.6E-1387131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
WQKVAAVIPG KTVSDVIRQY NDLEADVSSI EAGLIPVPGY ITSPFTLDWA GGGGSGGCNG  60
FKPGHSVCNK RSQAGRSPEL ERKKGVPWTE EEHKLFLMGL KKYGKGDWRN ISRNFVITRT  120
PTQVASHAQK YFIRQLSGGK DKRRASIHDI TTVNLEDEAS LESSKSSIVV GEQRSRFTAF  180
PWNQTDNNGT HADAFNITIG NAISGVHSYG QVMIGGFNNA ADSCYDAQNT MFQL*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g064550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188910.0AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07.
GenBankAY5195330.0AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds.
GenBankBT0054730.0BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477232.11e-176PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-85DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7MR441e-159D7MR44_ARALL; Myb family transcription factor
STRINGXP_010477232.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-154Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]