PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g065160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 614aa    MW: 69767.5 Da    PI: 6.0274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g065160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.11.1e-1222276011374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++cA+av+s d+++a++ L++++ ++s++gd +qRla+yf+ AL+ar+++   + ++  +p+s+ts   +++ l+a+klf++++Pi+   
  Csa02g065160.1 227 LRSLLTQCAQAVASFDQRRATEKLKEIRSHSSSSGDGTQRLAFYFADALEARITGnIAPPVSTPFPSSTTS---MVDILKAYKLFVHTCPIYVTD 318
                     6899***************************************************6777777777777777...********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f+++++vpfefn+ +ak++e
  Csa02g065160.1 319 YFAANKSIYELALKATTLHIVDFGVLYGFQWPCLLLALSKRPGGPPKLRVTGIELPQSGfrPSDRVEETGRRLKRFCDKFNVPFEFNF-IAKKWE 412
                     **********************************************************9*****************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
                     +++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+  +
  Csa02g065160.1 413 SISLDEIVINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSLFDMFDTTIQAEDeyK 507
                     ***************************************************************************************99998899 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+ +E+ell r++++v++cegaer++r et+++Wr r+ +aGFkp+++s++++k+ak ++rk + + + ++++++++++gWk+r ++++S+W+
  Csa02g065160.1 508 NRALLEKELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 601
                     *****************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.389201581IPR005202Transcription factor GRAS
PfamPF035143.9E-120227601IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MDALLQVTVD GFRFENGSGS CCKPRNNLES GNNLFPDYHE PQTQSSSPND SPPSVCLDNS  60
PVLKYINDML MDEEDFVGES RDNLALQAAE RSFYEILQQQ SPESDHTTSS SSGDDPFFTS  120
ISTTTTSADS AALVSNGESQ RKYRHRDDEE DDLETYRRNK QPAIFVSEME ELAVKFEHVL  180
LVCKANQEED ESAITKQQSQ QQQPNRAGRA KGSSNKSKTQ KPNSVDLRSL LTQCAQAVAS  240
FDQRRATEKL KEIRSHSSSS GDGTQRLAFY FADALEARIT GNIAPPVSTP FPSSTTSMVD  300
ILKAYKLFVH TCPIYVTDYF AANKSIYELA LKATTLHIVD FGVLYGFQWP CLLLALSKRP  360
GGPPKLRVTG IELPQSGFRP SDRVEETGRR LKRFCDKFNV PFEFNFIAKK WESISLDEIV  420
INPGETTVVN CIHRLQYTPD ETVSLDSPRD TVLKLFRDIN PDLFVFAEIN GMYNSPFFMT  480
RFREALFHFS SLFDMFDTTI QAEDEYKNRA LLEKELLVRD AMSVISCEGA ERFARPETYK  540
QWRVRILRAG FKPATISKQI MKEAKEIVRK RYHRDFVIDS DNNWMLQGWK GRVIYAFSCW  600
KPAEKLTYNH VNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4523360225380Protein SCARECROW
5b3h_A2e-4523360224379Protein SCARECROW
5b3h_D2e-4523360224379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g065160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAY0350010.0AY035001.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankAY0629420.0AY062942.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455040.10.0PREDICTED: scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A178UGG60.0A0A178UGG6_ARATH; Uncharacterized protein
STRINGXP_010455040.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]