PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g065600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 190aa    MW: 21371.6 Da    PI: 7.5052
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g065600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-1614106198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv       + + l +p +f++     k+ +kt+t+++ sg sWe+ +  rk+sg    +v  +GWk  +k+ +Lk gDf+ F++dg++ f  
  Csa02g065600.1  14 FFKVY--LPDESGDDLKIPISFTSFVP--KPFPKTVTVRSISGSSWELAF--RKCSGDvesFVVVDGWKLIAKDENLKGGDFLEFEFDGSRHF-- 100
                     67777..44555667*******96665..56999****************..888887778*************************9997777.. PP

                     EEEEE- CS
              B3  93 vvkvfr 98 
                     ++ +f+
  Csa02g065600.1 101 NFCIFE 106
                     777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-197107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-177108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.35112108IPR003340B3 DNA binding domain
CDDcd100175.70E-1412105No hitNo description
SMARTSM010196.8E-1514108IPR003340B3 DNA binding domain
PfamPF023622.4E-1414106IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-6108174IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNKGNSSDDC LPKFFKVYLP DESGDDLKIP ISFTSFVPKP FPKTVTVRSI SGSSWELAFR  60
KCSGDVESFV VVDGWKLIAK DENLKGGDFL EFEFDGSRHF NFCIFEPQVI KDYGLHFPES  120
ITIVDPLAKK FGILEKHIKI QTNGSVFVKG FGSIIRRNNM KTTDKIICEI KKTGDDNLVH  180
TMKIHILSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-134105199At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g065600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455999.13e-71PREDICTED: B3 domain-containing protein At5g60130-like
SwissprotQ9LVG17e-48Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLD7MT681e-86D7MT68_ARALL; Uncharacterized protein
STRINGscaffold_802655.12e-87(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.21e-50B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]