PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g067050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 203aa    MW: 23179.5 Da    PI: 3.9595
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g067050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.6e-1214107197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv       + + l lp +f +    ++  +k +++++  g+ W++ +  rk+ g    +v+ +GWk+ vk  +Lk g+f+ F +dg+ +f++
  Csa02g067050.1  14 FFKVY--LPDESGDDLELPISFNSFL--PNLLPKSVMVRSIYGNIWKMAF--RKCCGDierFVMVNGWKKIVKGVDLKGGEFLEFDFDGSWCFNF 102
                     66766..4445556699999997444..4557889***************..666666666***************************9999987 PP

                     EEEEE CS
              B3  93 vvkvf 97 
                     +v  +
  Csa02g067050.1 103 CVYGR 107
                     77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-178110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-1210109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.43312108IPR003340B3 DNA binding domain
CDDcd100172.06E-1012105No hitNo description
PfamPF023621.1E-914106IPR003340B3 DNA binding domain
SMARTSM010191.2E-714108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNKGNYVDGR LPKFFKVYLP DESGDDLELP ISFNSFLPNL LPKSVMVRSI YGNIWKMAFR  60
KCCGDIERFV MVNGWKKIVK GVDLKGGEFL EFDFDGSWCF NFCVYGRETC KMLRSSVQIK  120
EIEDVSSDGE DDKHSDDITV LDDENDDDQY YGDEDKSSEN IIVLDDDTSD VQDYGEEDTS  180
TEDIIVIDDD DGDDENEKKK RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g067050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266321e-101AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.
GenBankCP0026881e-101CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095666.11e-115PREDICTED: B3 domain-containing protein At5g60142-like, partial
SwissprotQ9LST32e-74Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLR0GS242e-95R0GS24_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010485253.11e-115(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.14e-69B3 family protein