PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g067410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 249aa    MW: 28336.3 Da    PI: 10.3778
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g067410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.69.8e-31258358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                    +v Y+eClkNhA+slGgha+DGCgEf+ ++++  +++ +l+C ACgCHRnFHRr+++
  Csa02g067410.1  2 AVLYNECLKNHAVSLGGHALDGCGEFIRKSTTIlTDTPSLRCDACGCHRNFHRRSPS 58
                    589**************************99999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-30168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-25356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-30556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.958556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.5E-24102167IPR009057Homeodomain-like
SuperFamilySSF466896.09E-14106167IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-28111167IPR006455Homeodomain, ZF-HD class
SuperFamilySSF466897.53E-15168230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-24168229IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-29173230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAVLYNECLK NHAVSLGGHA LDGCGEFIRK STTILTDTPS LRCDACGCHR NFHRRSPSDV  60
FSHCWSPPLQ PLASTPHLLL SLSSGFSGPS NQEDKNKFTV AKEDRSAMMM KKRKRTKLTA  120
DQKEKMRGFA ERAGWKINGS DEKWVKEFCS EVGIERQVLK VWIHNNNTSP SXKKRKRTKL  180
TADQKEKMRG FAERAGWKIN GSDEKWVKEF CSEVGIERQV LKVWIHNNKY FPNVKNRDTT  240
SSMSLKLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-181122291878ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177KKRKRT
2172179KKRKRTKL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g067410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114831e-130AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankCP0026881e-130CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456474.11e-115PREDICTED: zinc-finger homeodomain protein 12-like
SwissprotQ9FKJ93e-95ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLA0A178UPU65e-93A0A178UPU6_ARATH; ZHD12
STRINGXP_010456467.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.15e-83homeobox protein 26