PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g067790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 190aa    MW: 22047.7 Da    PI: 9.174
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g067790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.7e-1477136463
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +r+rr+ +NRe+ArrsR+RKk++ieeL++ v++L   N+ L +++ +l +   ++ +e+
  Csa02g067790.1  77 ERRARRMVSNRESARRSRLRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQVLQEN 136
                     689******************************************999999999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-1474138IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.24376139IPR004827Basic-leucine zipper domain
PfamPF001707.7E-1477136IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-1178134No hitNo description
SuperFamilySSF579596.88E-1178129No hitNo description
CDDcd147021.20E-1579130No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MIRNLKPYME SGVHRSHCFD IFEGVPLQDD HFNSAFLPNT DFNVQLQSAS TRSNNNQSQF  60
DANALNIFHN EGLLPEERRA RRMVSNRESA RRSRLRKKKQ IEELQQQVEQ LMMLNHHLSE  120
KVINLLESNH QVLQENSQLK EKVSSFHLLM ADVLLPMRNA ETNINDRNVN HYLRGETSNR  180
PTNNSPFGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096RRSRLRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g067790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154721e-175AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBankCP0026881e-175CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456776.11e-137PREDICTED: basic leucine zipper 43-like
TrEMBLQ9FJH31e-111Q9FJH3_ARATH; Uncharacterized protein
STRINGXP_010456776.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.11e-93basic leucine-zipper 70