PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g068440.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 294aa MW: 33125 Da PI: 6.7843

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g068440.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	11	32	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ksFs+ L H+++H Csa02g068440.1 11 TCQVCKKSFSNGKALGGHMKSH 32 6*******************99 PP
2	zf-C2H2	11.2	0.0012	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F + L H + H Csa02g068440.1 257 YECEICKRVFESGQALGGHKKIH 279 99**********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.408	10	37	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.094	10	32	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.73E-7	11	32	No hit	No description
Pfam	PF13912	1.0E-9	11	34	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	12	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.73E-7	211	238	No hit	No description
PROSITE profile	PS50157	10.596	216	243	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.0E-8	216	239	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.47	216	238	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	218	238	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.45E-5	255	280	No hit	No description
Pfam	PF13912	1.6E-10	256	279	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.159	257	279	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.055	257	279	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	259	279	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MMNSLLNQKR TCQVCKKSFS NGKALGGHMK SHRKLSPESS TSSITSSLRS RINLGANFRT 60 HETVMMRSVH TNEVVGGQTP DLNQEGEQQV TTLKKKLVLE LDKENSTESP ALCLLQMKDM 120 WSKSYQTPKS NDSLISTREG KDIEKYIEID SEEDKEDSDD EYVVEDEDNE DGDALKFLTS 180 DVGYLTADSD KNDDNYGDEN AYYGAKERKG KKQSKYMCDI CGKILRSYQA LGGHRTSHSN 240 KKLKISDQDV PAVRQHYECE ICKRVFESGQ ALGGHKKIHY MFLQPFNFST SAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g068440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010477786.1	0.0	PREDICTED: zinc finger protein ZAT1-like
TrEMBL	R0G7H6	1e-127	R0G7H6_9BRAS; Uncharacterized protein
STRING	XP_010477786.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14171	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61470.1	1e-76	C2H2-like zinc finger protein