PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g068560.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 206aa MW: 23230.9 Da PI: 5.897

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g068560.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.2	3.6e-17	110	160	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f + +Aa+a++ a+ kl+g Csa02g068560.1 110 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYAAFKLRG 160 7******.******954..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.1E-30	109	169	IPR001471	AP2/ERF domain
SMART	SM00380	9.6E-35	110	174	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-22	110	169	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.605	110	168	IPR001471	AP2/ERF domain
CDD	cd00018	2.88E-19	110	168	No hit	No description
Pfam	PF00847	8.5E-12	110	160	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-13	111	122	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-13	150	170	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MATLEESSDM DVMLQKHLFD DLMIPDDFIE DFVFDDTAFV SGLWSLETFN PPVPKLEPSS 60 PVLDPDSYVQ EFLQVEAESS SSSSSITTSP EVETVSNRKK TKRFEEMTRH YRGVRRRPWG 120 KFAAEIRDPA KKGSRIWLGT FESDIDAARA YDYAAFKLRG RKAVLNFPLD AGKYDAPVNS 180 CRKRRRSDVP QPRGTRTSTS SSSSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-28	109	169	4	64	ATERF1
3gcc_A	2e-28	109	169	4	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	185	RKRRR
2	181	186	RKRRRS

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g068560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB012239	0.0	AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBank	AY045968	0.0	AY045968.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBank	AY079321	0.0	AY079321.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457527.1	1e-150	PREDICTED: ethylene-responsive transcription factor ERF107-like
Swissprot	Q9FKG2	1e-108	EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBL	M4D8X9	1e-108	M4D8X9_BRARP; Uncharacterized protein
STRING	XP_010457527.1	1e-149	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61590.1	2e-98	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Suh MC,Go YS DEWAX-mediated transcriptional repression of cuticular wax biosynthesis in Arabidopsis thaliana. Plant Signal Behav, 2014. 9(8): p. e29463 [PMID:25763625] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Ju S,Go YS,Choi HJ,Park JM,Suh MC DEWAX Transcription Factor Is Involved in Resistance to Botrytis cinerea in Arabidopsis thaliana and Camelina sativa. Front Plant Sci, 2017. 8: p. 1210 [PMID:28744297] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]