PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g071880.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 164aa MW: 18383.6 Da PI: 9.7155

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g071880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.7	9.3e-37	38	97	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnyslsqP yfCk+Cr yWtkGG+lrn+PvGgg+rknkk s Csa02g071880.1 38 DHPQKCPRCESTHTKFCYYNNYSLSQPLYFCKTCRYYWTKGGTLRNIPVGGGCRKNKKPS 97 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	33	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-31	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.177	41	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MLGSSVIRRK HVRLFEDFSI SSRHTGCWQH YSLSQPHDHP QKCPRCESTH TKFCYYNNYS 60 LSQPLYFCKT CRYYWTKGGT LRNIPVGGGC RKNKKPSSSN SSSSTSFGKK PSDIVTTNTT 120 DLMALAHSHQ NYQNSPLGFS HFGGIMGSYS TPEHSNVGFL ESK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g071880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB009053	1e-156	AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.
GenBank	AK228992	1e-156	AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.
GenBank	BT020467	1e-156	BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	BT020576	1e-156	BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	CP002688	1e-156	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866523.1	1e-69	dof zinc finger protein DOF5.6
Swissprot	Q9FM03	6e-68	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	D7MNC9	3e-68	D7MNC9_ARALL; Uncharacterized protein
STRING	XP_010478252.1	1e-119	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	9e-69	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]