PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g073920.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 194aa MW: 21973 Da PI: 5.3063

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g073920.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.3	6.4e-28	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk++ + r+YY+C+s+gC+vkk+ver++ed +v++tY g Hnhe Csa02g073920.1 108 MDDGFKWRKYGKKSVKNNINKRNYYKCSSEGCSVKKRVERDSEDAAYVITTYDGVHNHE 166 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-30	95	168	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-26	100	168	IPR003657	WRKY domain
PROSITE profile	PS50811	28.816	103	168	IPR003657	WRKY domain
SMART	SM00774	6.0E-31	108	167	IPR003657	WRKY domain
Pfam	PF03106	5.5E-22	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MDISQNPSFT YFSDENFINP FMDNNDFSNL MFFDVDEGGN NGLIDNEISS PTSIISSETF 60 TGESGGSGSA TTLIKKESTR NTGSKDSDQT KEMGHRVAFR TRSKIDVMDD GFKWRKYGKK 120 SVKNNINKRN YYKCSSEGCS VKKRVERDSE DAAYVITTYD GVHNHESPSH VYYNEMVLSY 180 DHDNWNQHSL LQC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-24	98	169	7	78	Probable WRKY transcription factor 4
2lex_A	8e-24	98	169	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g073920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493813	0.0	AB493813.1 Arabidopsis thaliana At5g64810 mRNA for hypothetical protein, partial cds, clone: RAAt5g64810.
GenBank	AF426252	0.0	AF426252.1 Arabidopsis thaliana WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
GenBank	BT025755	0.0	BT025755.1 Arabidopsis thaliana At5g64810 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462706.1	1e-143	PREDICTED: probable WRKY transcription factor 51
Refseq	XP_010462714.1	1e-143	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	1e-126	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A178U879	1e-124	A0A178U879_ARATH; WRKY51
STRING	XP_010462706.1	1e-142	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-106	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]