PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g074000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 405aa    MW: 44082.7 Da    PI: 8.2735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g074000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-20197246255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+ ae Aa+a+++a+++++g
  Csa02g074000.1 197 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 246
                     7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-22197255IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-32197255IPR001471AP2/ERF domain
SMARTSM003808.4E-36197260IPR001471AP2/ERF domain
PROSITE profilePS5103225.106197254IPR001471AP2/ERF domain
PfamPF008473.2E-13197246IPR001471AP2/ERF domain
PRINTSPR003675.5E-11198209IPR001471AP2/ERF domain
CDDcd000181.38E-25205256No hitNo description
PRINTSPR003675.5E-11220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MCVLKVANQE DNVGNKAEST TTTTKEDDHR TLSDIDQWLY LFASEDDHHH NRHNFSTQQQ  60
QPQPQPPSSS SLMSGFSREM EMSAIVSALT HVVAGNVPQH PQQQQHGCGG DGSGEGTSNS  120
SSSSGHKRRR AVDEGGGKAV KAANTLTVDQ YLSGGTSSTS KAREASSNMS GPGPTYEYTA  180
TANSEASSFS GDQPRRRYRG VRQRPWGKWA AEIRDPFKAA RVWLGTFDNA ESAARAYDEA  240
ALRFRGNKAK LNFPENVKLV RPASTAAAAP QPQTAVQRPT QSRNSGSTIR PDSDHTIPIH  300
SQPSTQPYNS SYSEMARHQQ QFQQHHHQQS MDLYNQMSFP SRFGHTGGSM MQSTSSSSSP  360
SRPLFSSAAG QPQPESASET GYLQDIQWPS EKTSNSYNNN SPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22196257163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g074000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462789.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
SwissprotQ9FGF81e-167ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLR0EXA91e-173R0EXA9_9BRAS; Uncharacterized protein
STRINGXP_010462789.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-135ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]