PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g074260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 425aa    MW: 47457.4 Da    PI: 7.2451
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g074260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-10165222156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkklege 56 
                     s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g+
  Csa02g074260.1 165 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWGH 222
                     57*******************4444.2344336655.7799999*************997 PP
2AP249.41.1e-15266315355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Csa02g074260.1 266 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 315
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-8165222IPR001471AP2/ERF domain
CDDcd000185.64E-18165231No hitNo description
SuperFamilySSF541712.94E-14165230IPR016177DNA-binding domain
SMARTSM003806.4E-20166235IPR001471AP2/ERF domain
PROSITE profilePS5103216.95166229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-11166230IPR001471AP2/ERF domain
PRINTSPR003673.0E-6167178IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18264324IPR016177DNA-binding domain
CDDcd000185.72E-11264323No hitNo description
SMARTSM003803.3E-30265329IPR001471AP2/ERF domain
PROSITE profilePS5103219.269265323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18265323IPR001471AP2/ERF domain
PfamPF008475.3E-10266315IPR001471AP2/ERF domain
PRINTSPR003673.0E-6305325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MADSTTLSTF FDSQILSQTQ IPKLEDFLGD SFVRYSDDQT ETLDDSSSLT RFYDLRHHTV  60
TGGFFSDHHH HHDFKTVNSG SEIVDDIVAT HLSGHAAVKS SSTTAELGFN NGGATTGEAL  120
SLAVNNNTSS DQQPQSNKKK TIVSKKDSSD ESKKKVVEPL GQRTSIYRGV TRHRWTGRYE  180
AHLWDNSCRR EGQARKGRQG GYDKEDKAAR AYDLAALKYW GHIATTNFPV ASYSKELEEM  240
NHMTKQEFIA SLRRKSSGFS RGASMYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE  300
EAAEAYDIAA IKFRGINAVT NFEMNRYDVE AVMKCSFPVG AAKRHKVAVE SPPSSDHSLQ  360
QQDLLPPSSS SDVHPNSIPC GIPYDPSVLY HHQNFFQHYP LVSDSTVQVP MNSAEFFLWP  420
NQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g074260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608870.0AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462993.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X2
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLR0EWM60.0R0EWM6_9BRAS; Uncharacterized protein
STRINGXP_010462989.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]