PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g075210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 258aa    MW: 27577.1 Da    PI: 8.1587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g075210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-0596118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksFs+   L  H  +H
  Csa02g075210.1  96 YKCTVCGKSFSSYQALGGHKTSH 118
                     9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.67E-1195118No hitNo description
Gene3DG3DSA:3.30.160.604.8E-596118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.21996123IPR007087Zinc finger, C2H2
SMARTSM003550.002896118IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-1496120IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576679.67E-11169196No hitNo description
SMARTSM003550.84174196IPR015880Zinc finger, C2H2-like
PfamPF139129.1E-11174198IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328174196IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MALETLNSPT ATTTTAARPL LRYREEMEPE NLEQWAKRKR TKRQRFDHHH QNQETNTKLP  60
SEEEYLALCL LMLARGSGAV QSPPPSRPSP SYQRDYKCTV CGKSFSSYQA LGGHKTSHRK  120
PTNNNSTTII TSGNQELSNN NSHHSNSNSA GPVVINVTVN TSNGAAGQTS GKIHTCSICF  180
KSFTSGQALG GHKRCHYDGG NNNGNGSSSN SVEVVAGGGS DVSDVENERS SEESAIGGGH  240
RGFDLNLPAD QVSVTTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g075210.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076451e-94AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14.
GenBankAB0307311e-94AB030731.1 Arabidopsis thaliana AZF1 gene for Cys2/His2-type zinc finger protein 1, partial cds.
GenBankAF5250221e-94AF525022.1 Arabidopsis thaliana zinc finger protein gene, complete cds.
GenBankAY1233281e-94AY123328.1 Arabidopsis thaliana zinc finger protein OZAKGYO (OZAKGYO) gene, complete cds.
GenBankCP0026881e-94CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464022.10.0PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW11e-124AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR0EU431e-130R0EU43_9BRAS; Uncharacterized protein
STRINGXP_010464022.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-101zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]