PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g075720.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 161aa MW: 18968.2 Da PI: 10.6746

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g075720.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.8	1.6e-26	41	90	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL+++ T+LK++CR++GI+RWPhRk++sl Csa02g075720.1 41 SKLSREMMKQYFYMPIAKAAKELNIGITLLKKKCRELGIPRWPHRKLSSL 90 6899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.474	25	110	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-21	43	90	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGDPNMEKVC YEDDSTKTLK ETRSQKRIIV KRRYKEDMVS SKLSREMMKQ YFYMPIAKAA 60 KELNIGITLL KKKCRELGIP RWPHRKLSSL NTLITNLKDS LRNTEGETNK SKLRNALELL 120 EMEKKMIEEV PNWEFGDKTK RLRQASFKAN YKRRRVFSSS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	155	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g075720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	2e-70	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	2e-70	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464626.1	1e-113	PREDICTED: protein RKD3-like
Swissprot	Q9FGD1	6e-86	RKD3_ARATH; Protein RKD3
TrEMBL	R0GPV5	2e-87	R0GPV5_9BRAS; Uncharacterized protein
STRING	XP_010464626.1	1e-112	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	6e-77	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]