PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g075990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 592aa    MW: 65396.9 Da    PI: 4.3922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g075990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.75.8e-1152305913374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + +++cA+ +s++d+++a+++L +++e +s+ gdp++R+ +yf+eAL++rl+          ++s+   +++++ + ++k++++++P+ kf+hlt
  Csa02g075990.1 230 KSIYDCAR-ISDSDQNEASKALVQIRESVSELGDPTERVGFYFAEALSNRLSP---------TTSSF--TSTEDFILSYKTLNDACPYSKFAHLT 312
                     66889999.8999***************************************9.........22222..236899******************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+e ++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fef + + + ++ l
  Csa02g075990.1 313 ANQAILEATEDSNKIHIVDFGIVQGIQWPALLQALATRSSGKPtQIRVSGIPAPSLGesPEPSLIATGNRLRDFAKVLDLNFEFVP-ILTPIHLL 406
                     ***************************************77776**********99998999************************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + +++rv+p+EalaVn++lql++ll+e+ ++ +   + L+l ksl+P+vv++ e e+++n+  F++r+ +a+++ysa+f+sle +l+r+seer+ 
  Csa02g075990.1 407 NGSSFRVDPDEALAVNFMLQLYKLLEETPTIVD---TALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNAIQFYSAVFESLEPNLGRDSEERVR 498
                     *************************99999988...*********************************************************** PP

            GRAS 285 vErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     vEr+l+gr+i+ ++  e++  +rer+e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s  y++ e++  +v l W++ pL+++S+Wr
  Csa02g075990.1 499 VERVLFGRRISGLIGPEKTGiHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySSLYSIVESKPGFVsLAWNELPLLTLSSWR 591
                     *****************99989****************************************9999*******99999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.096202569IPR005202Transcription factor GRAS
PfamPF035142.0E-112230591IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAYMCTTDSG NLMAIAQQVI KQKQQQEQQQ QQQHHQDHQL FGINPLSLNP WPNNTSLGFG  60
SAFPDPFQVT AGGDSNDPAF PFPSLDHHHA TTAGSGFRLS DFGGGTDGAE FESDEWMETL  120
ITGGDSVAAP TTTTDCDTWH NDPDYAIYGP DPFATYPSRL SSDLNNRVIE TSSPLPPPTL  180
WPPSSPPLSI PPLPPHETTT TTTTTTATED PETNDSEEDD DFDLEPPLLK SIYDCARISD  240
SDQNEASKAL VQIRESVSEL GDPTERVGFY FAEALSNRLS PTTSSFTSTE DFILSYKTLN  300
DACPYSKFAH LTANQAILEA TEDSNKIHIV DFGIVQGIQW PALLQALATR SSGKPTQIRV  360
SGIPAPSLGE SPEPSLIATG NRLRDFAKVL DLNFEFVPIL TPIHLLNGSS FRVDPDEALA  420
VNFMLQLYKL LEETPTIVDT ALRLAKSLNP RVVTLGEYEV SLNRVGFANR VKNAIQFYSA  480
VFESLEPNLG RDSEERVRVE RVLFGRRISG LIGPEKTGIH RERMEEKEQW RVLMENAGFE  540
SVKLSNYAVS QAKILLWNYN YSSLYSIVES KPGFVSLAWN ELPLLTLSSW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1512275913375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g075990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0107000.0AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBankAY0625380.0AY062538.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770; MUD21.1) mRNA, complete cds.
GenBankBT0025800.0BT002580.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464893.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A178US250.0A0A178US25_ARATH; Uncharacterized protein
STRINGXP_010464893.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]