PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03598s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 208aa MW: 23874.9 Da PI: 6.1734

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03598s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.9	5.6e-16	1	39	18	56
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Csa03598s010.1 1 MFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 39 69**********************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-15	1	48	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.511	1	41	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-13	1	39	IPR001356	Homeobox domain
SMART	SM00389	0.0021	1	45	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.55E-13	1	45	IPR009057	Homeodomain-like
CDD	cd00086	2.64E-12	2	41	No hit	No description
PROSITE pattern	PS00027	0	16	39	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	12.621	163	208	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT QLERHENALL RQENDKLRAE 60 NMSIREAMRN PICTNCGGPA MLGDVSLEEH HLRIENARLK DELDRVCNLT GKFLGHHHHH 120 YNSSLELAVG TNNGGNFAFP PDFGGGACLP PPQQQQQQTG INGIDQKSVL LELALNAMDE 180 LVKLAHSEEP LWVKSLDGER DELNQDEY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03598s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226968	0.0	AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10.
GenBank	ATU85254	0.0	U85254.1 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010419627.1	1e-150	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Refseq	XP_010419628.1	1e-150	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Refseq	XP_010456250.1	1e-150	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Refseq	XP_010497426.2	1e-153	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like, partial
Refseq	XP_019090649.1	1e-150	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	1e-127	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	R0H8W0	1e-138	R0H8W0_9BRAS; Uncharacterized protein
STRING	XP_010419627.1	1e-149	(Camelina sativa)
STRING	XP_010456250.1	1e-149	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17003	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-125	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]