PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g001180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 262aa    MW: 29370.2 Da    PI: 6.5429
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g001180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008487109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F+++  L  H  +H
  Csa03g001180.1  87 FQCKACKKVFTSHQALGGHRASH 109
                     89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.28E-686109No hitNo description
PfamPF139122.3E-986111IPR007087Zinc finger, C2H2
SMARTSM003550.07287109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.15987114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576679.28E-6157184No hitNo description
PfamPF139121.3E-12161185IPR007087Zinc finger, C2H2
SMARTSM003550.51162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307162184IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNSSCIYFVM FSRGQHDEDN MSTRRPWKRP DSHHHKHLNL SPNEDEELAN CLVLLSNSGE  60
AHGGDHHHKH GHGKGKTVKK QKTAQVFQCK ACKKVFTSHQ ALGGHRASHK KVKGCFASQD  120
KEEEDEEEYK EDDEEEEEEE DEMEDEDKST AHIPRKRSSN THECTICHRV FSSGQALGGH  180
KRCHWLTPSN YLRMTTSSLH DSVGRPQPLD QPSLDLNLAC QEYSVDPTAM SVGMIQRDGG  240
GGNNHNATSS SWLKLASGDW S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g001180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0300400.0BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171706.11e-142C2H2-type zinc finger family protein
TrEMBLA0A178W2961e-141A0A178W296_ARATH; Uncharacterized protein
TrEMBLQ3EDL31e-140Q3EDL3_ARATH; At1g02040
STRINGAT1G02040.11e-141(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-23C2H2-like zinc finger protein