PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g001710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26519.2 Da    PI: 10.1605
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g001710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.54.1e-241662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +n  n qvtfskRr g++KKA+EL++LCda++ +i+fs++gk+y +
  Csa03g001710.1 16 MKNRANLQVTFSKRRSGLFKKASELCTLCDAQIVIIVFSPSGKVYSF 62
                    58999****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.016666IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-34665IPR002100Transcription factor, MADS-box
CDDcd002655.34E-32772No hitNo description
SuperFamilySSF554553.4E-25772IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-20828IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-202843IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-204364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRKNLGRRK VEMVKMKNRA NLQVTFSKRR SGLFKKASEL CTLCDAQIVI IVFSPSGKVY  60
SFGHPDVNIL VDYSSGRVSN TNLDDINRKP FIQLLNDRLT GAKAGKENAQ GNKAMLLENE  120
RESSNNPGNW WRNSPAELNL SQLARMKDAL EGLIKEVDET APPSPFHQTT LTFYIATPTT  180
VNGVNVFTNQ GLFEPILAFP FGFNIMNRTP AGYNHSHIQN QEFKQAHPHH GPRYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-15684183MEF2 CHIMERA
6byy_B9e-15684183MEF2 CHIMERA
6byy_C9e-15684183MEF2 CHIMERA
6byy_D9e-15684183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g001710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480186.11e-177PREDICTED: agamous-like MADS-box protein AGL28
SwissprotQ9LMM88e-91AGL28_ARATH; Agamous-like MADS-box protein AGL28
TrEMBLR0I4791e-101R0I479_9BRAS; Uncharacterized protein
STRINGXP_010480186.11e-177(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17507710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.13e-93AGAMOUS-like 28
Publications ? help Back to Top
  1. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]