PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g001950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 191aa    MW: 20859.7 Da    PI: 5.8286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g001950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-184393155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Csa03g001950.1 43 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLKG 93
                    68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-124393IPR001471AP2/ERF domain
SMARTSM003801.2E-3344107IPR001471AP2/ERF domain
PROSITE profilePS5103222.90644101IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2144103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3044102IPR001471AP2/ERF domain
CDDcd000183.54E-3045102No hitNo description
PRINTSPR003675.7E-124556IPR001471AP2/ERF domain
PRINTSPR003675.7E-1283103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSQQRMKLSP PPLANNEQSP TASAVKSCSG GGGRATSSTT RHPVYHGVRK RRWGKWVSEI  60
REPRKKSRIW LGSFPVPEMA AKAYDVAAFC LKGRKAQLNF PDEIDDLPRP STCTARDIQV  120
AAAKAANAVK IIEMVDVDDV ADADDFWEGI ELPELMMTGG GWSPEPFVAG DDATWLVDGD  180
LYQCQFMACL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1732105476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g001950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0865070.0AY086507.1 Arabidopsis thaliana clone 25524 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480467.11e-140PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-112ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLR0IN741e-111R0IN74_9BRAS; Uncharacterized protein
STRINGXP_010480467.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-98ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]