PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g004930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 211aa    MW: 22670.2 Da    PI: 4.43
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g004930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-172372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIr p     +  r +lg+f tae+Aa+a++ a+++++g
  Csa03g004930.1 23 RYRGVRKRP-WGKYAAEIRNPI----SkNRMWLGTFKTAEDAARAYDSAAREFRG 72
                    69*******.**********72....359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-302380IPR001471AP2/ERF domain
CDDcd000181.20E-292379No hitNo description
SuperFamilySSF541715.04E-212380IPR016177DNA-binding domain
PROSITE profilePS5103223.3672380IPR001471AP2/ERF domain
PfamPF008471.9E-102372IPR001471AP2/ERF domain
SMARTSM003802.3E-342386IPR001471AP2/ERF domain
PRINTSPR003671.1E-102435IPR001471AP2/ERF domain
PRINTSPR003671.1E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTPQDQKSVT NAAGGREVVR EVRYRGVRKR PWGKYAAEIR NPISKNRMWL GTFKTAEDAA  60
RAYDSAAREF RGSKAITNFS LPGYGGGALV TPVNNSSLSL TVPERTIPPG ARDVEITFSL  120
SEHAGAQDVL SPAVAEAVAG FYLDQPEAIE LRDELDRVYP LGFEPNDMGL SIGLETPVEV  180
EPESSSAVEV EPESYSAVDG NLNLDLNLGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-202481361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-202481664ATERF1
3gcc_A7e-202481664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAPTransfer from AT1G03800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g004930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482529.11e-151PREDICTED: ethylene-responsive transcription factor 10-like
SwissprotQ9ZWA22e-59ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLR0I9862e-58R0I986_9BRAS; Uncharacterized protein
STRINGXP_010482529.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.16e-39ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]