PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g008550.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 378aa MW: 41571.4 Da PI: 6.4327

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g008550.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	212	268	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + Csa03g008550.1 212 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGMNV 268 9*******************************************9999877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-15	208	272	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	210	273	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	212	262	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-9	212	264	No hit	No description
Pfam	PF00170	6.6E-9	212	265	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.80E-24	213	262	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MDKEKAPAPP SGGLPPPSGR YSTFSPNASS FAMKAESSFP PHLTPTGSSS ADATNRFSHD 60 ISRMPDNPPK NLGHRRAHSE ILTLPDDLSF DSDLGVVGAA ADGPSFSDDT DEDLMYMYLD 120 MDKFNSSATS TSQMGEPSEP AWRNELGGST SNLQSTPGSS SERPRIRHQH SQSMDGSTSI 180 KPEMLNEDVS GVDSKKAISA AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER 240 KVQTLQTEAT SLSAQLTLLQ RDTNGMNVEN NELKIRVQTM EQQVHLQDAL NDALKEEVQH 300 LKVLTGQDLS TKLAQKLRKQ FPDRELNQTK PNRYCPSRID FLQQQTGTLS CGHGRLTLSP 360 CLLEMKTDSI NGDEQSL*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MDKEKAPAPP SGGLPPPSGR YSTFSPNASS FAMKAESSFP PHLTPTGSSS ADATNRFSHD  60
ISRMPDNPPK NLGHRRAHSE ILTLPDDLSF DSDLGVVGAA ADGPSFSDDT DEDLMYMYLD  120
MDKFNSSATS TSQMGEPSEP AWRNELGGST SNLQSTPGSS SERPRIRHQH SQSMDGSTSI  180
KPEMLNEDVS GVDSKKAISA AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER  240
KVQTLQTEAT SLSAQLTLLQ RDTNGMNVEN NELKIRVQTM EQQVHLQDAL NDALKEEVQH  300
LKVLTGQDLS TKLAQKLRKQ FPDRELNQTK PNRYCPSRID FLQQQTGTLS CGHGRLTLSP  360
CLLEMKTDSI NGDEQSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g008550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419854	0.0	AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AK229666	0.0	AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03.
GenBank	BT028965	0.0	BT028965.1 Arabidopsis thaliana At1g06070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485754.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-153	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	R0INM3	0.0	R0INM3_9BRAS; Uncharacterized protein
STRING	XP_010485754.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-179	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]