PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g008580.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

DBB

Protein Properties

Length: 250aa MW: 27703 Da PI: 5.0312

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g008580.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.9	3.5e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++ C ++ lC++C e+H H+ Csa03g008580.1 4 QCDVCEKAPATVICCADEAALCPKCDIEIHAAnklaskHQ 43 7*****************************6566676765 PP
2	zf-B_box	30.3	8.6e-10	55	86	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 ++C+ ++ek + +fC +++ llC+dC +++H Csa03g008580.1 55 PRCDICQEKAAFIFCVEDRALLCRDCDESIHV 86 79*****************************4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.158	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.22E-5	3	45	No hit	No description
SMART	SM00336	1.0E-6	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.684	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-16	52	99	IPR000315	B-box-type zinc finger
CDD	cd00021	1.35E-8	55	98	No hit	No description
Pfam	PF00643	1.4E-7	55	95	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MKIQCDVCEK APATVICCAD EAALCPKCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC 60 QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT GIKVALTSTS CTKELEKNQS 120 EPSNNQQKAN QVPAKTPSQQ QQQTSSATQL PWAVDDFFHF SDIESTDKKG QLDLGAGELD 180 WFSDMGFFGD QINQEALPAA EVPELSVSHL GHVHSYKPMK SSVPNKKPRF EIRDDDDDDE 240 EHFIVPDLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269\|PubMed:12909688, ECO:0000269\|PubMed:17605755, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:21685177, ECO:0000269\|PubMed:22410790, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g008580.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269\|PubMed:17605755}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045794	0.0	AY045794.1 Arabidopsis thaliana putative salt-tolerance protein (At1g06040) mRNA, complete cds.
GenBank	AY079377	0.0	AY079377.1 Arabidopsis thaliana putative salt-tolerance protein (At1g06040) mRNA, complete cds.
GenBank	X95572	0.0	X95572.1 A.thaliana mRNA for salt-tolerance protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485788.1	0.0	PREDICTED: B-box zinc finger protein 24
Swissprot	Q96288	1e-164	BBX24_ARATH; B-box zinc finger protein 24
TrEMBL	A0A178W110	1e-162	A0A178W110_ARATH; STO
STRING	XP_010485788.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2711	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	1e-160	DBB family protein

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Imtiaz M, et al. Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis. Plant Mol. Biol., 2015. 89(1-2): p. 1-19 [PMID:26253592] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209]