PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g009620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 262aa    MW: 29640.8 Da    PI: 6.2383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g009620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ll+d+++++G ++W++ ++  g+ R++k+c++rw +yl
   Csa03g009620.1 14 KGPWSAEEDQLLIDYITLHGHPNWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding46.67.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   Csa03g009620.1  67 RGNFTSLEEDTIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.684965IPR017930Myb domain
SuperFamilySSF466892.66E-2910108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002492.1E-151461IPR001005SANT/Myb domain
CDDcd001673.00E-101661No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2565116IPR009057Homeodomain-like
SMARTSM007171.7E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129417.21366116IPR017930Myb domain
PfamPF002493.6E-1367112IPR001005SANT/Myb domain
CDDcd001673.38E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRRPCCEKM GLKKGPWSAE EDQLLIDYIT LHGHPNWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TSLEEDTIIN LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLYQNQ  120
DGDNKETVVT TTTTTDAKRP TSPEQQQQQS SSSADVSAVT TSGNNNDHIS NNNNKDSATS  180
SKDVPALIDE SFWSEVVSMD YNISGDDHVK NEIKIENWEG SLDRNDKGFS FSKLYNHDME  240
FWFDHLTSSP IVGEISDISD F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g009620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485830.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LNC91e-134MYB13_ARATH; Transcription factor MYB13
TrEMBLV4L2001e-138V4L200_EUTSA; Uncharacterized protein
STRINGXP_010485830.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-126myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]