PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g010920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 714aa    MW: 81203 Da    PI: 5.394
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g010920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.44.8e-1063347102373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL+ cA+ vs+gd+  a+ lL ++++++sp gd+ qRla++f++AL+arl++ s++++ +   + +++++  ++ l+++++f  +sP++++ +
  Csa03g010920.1 334 RTLLTLCAQSVSAGDKITADDLLRQIRKQSSPLGDASQRLAHFFANALEARLQGsSGNTIQSYYDSITSKKRIAAQILKSYHVFLSASPFMTLIY 428
                     6799**************************************************555555555566666666699******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++Il+a++g++ +HiiDf+i +G+QWp ++q L++ + g  +lRiTg++ p++g   +e+++ tg+rL+++++++g+pfe+n++++k++e+
  Csa03g010920.1 429 FFSNKMILDAAKGASVLHIIDFGILYGFQWPMFIQHLSNNKTGLRKLRITGIELPQHGfrPTERIQDTGRRLTEYCKRFGIPFEYNAIASKNWET 523
                     *********************************************************9******************************99***** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +++ee++++p+E+laVn vl+ ++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F +rf eal +ysalfd + a+l+re+ er
  Csa03g010920.1 524 IRIEEFKIRPNEVLAVNTVLRFKNLRDATPGEEDcPRDGFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSALFDLFGATLSRENPER 618
                     **************************9999888889*********************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     i  E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ +  ++k +  + + ++e+s+++++gWk+r L+s S+W
  Csa03g010920.1 619 IHFEGEFYGREVMNVIACEGIDRVERPETYKQWQVRMIRAGFKQKPVKAELVESFREKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 710
                     *************************************************************999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.974307690IPR005202Transcription factor GRAS
PfamPF035141.7E-103334710IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MESKNYSGVV NGYECYDVSF LPNQIPDLGF GVPSSSDFDL RIDQYHHQQP SSIWVPPSSS  60
QDDQYSPPAD EIDSENTLLK YVNQLLMEES IAENQSMFYD SLALRQTEEM LQQVINDSQT  120
QPHLPNSVTT SSSSSSNSSG DYWNSSNSNS SVSNETAANS TTETEVLYDN HLVDSGVVSD  180
PRSSVLQFGQ PANEVLVRCM FSDADSVMQF KRGLEEASKF LPNTDQWIFN LDPEKERVVP  240
VKEEKDWSGI SRTRKSHHAR EEEEDDLEET RSSKQYAVNV EDGKLTEMFD KVLLLDGECD  300
PQIKEDGENG SNKVLQAKRG TGRGKKKSQA VDFRTLLTLC AQSVSAGDKI TADDLLRQIR  360
KQSSPLGDAS QRLAHFFANA LEARLQGSSG NTIQSYYDSI TSKKRIAAQI LKSYHVFLSA  420
SPFMTLIYFF SNKMILDAAK GASVLHIIDF GILYGFQWPM FIQHLSNNKT GLRKLRITGI  480
ELPQHGFRPT ERIQDTGRRL TEYCKRFGIP FEYNAIASKN WETIRIEEFK IRPNEVLAVN  540
TVLRFKNLRD ATPGEEDCPR DGFLKLIRDM NPNVFLSSTI NGSFNAPFFT TRFKEALFHY  600
SALFDLFGAT LSRENPERIH FEGEFYGREV MNVIACEGID RVERPETYKQ WQVRMIRAGF  660
KQKPVKAELV ESFREKMKKW GYHKDFVLDE DSNWFLQGWK GRILFSSSCW VPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-4234071011374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g010920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487532.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLR0INN70.0R0INN7_9BRAS; Uncharacterized protein
STRINGXP_010487532.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein