PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g010940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 596aa    MW: 66933.9 Da    PI: 9.9922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g010940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07503552147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   Csa03g010940.1 503 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 552
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864498557IPR017930Myb domain
SMARTSM007177.0E-7502555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-10503553IPR009057Homeodomain-like
CDDcd116601.88E-16504554No hitNo description
SuperFamilySSF466891.96E-15504585IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEVKTE  60
PLNGRDTTVE EETTNNIAER SFFVSEILPK SHEIQSFNRS PGPLTEFHFG SSSGVTSDSS  120
EKFETQELAY EDTKIDNNSD HCYRSECNDK KSMLGGLNFE AKLSRNVVAK DEDHIGSGLR  180
KPIPQNPSVC SDDIDLLGKE NDDDGENLSA RYRTKSFRST LRIGDRRIRK VFASKYCKDS  240
PKPRDTTVTN SDLDMKHGYY SKKHCLKSQR LERNYPIKKR RYFDGYTASQ SEETAKTEGL  300
SGSPRKVSGF LSSIACQKQP ALQSRDSHVK LGIKSFRVPE LFIEIPETAT VGSLKRTVLE  360
ALTSILGGEL RIGVLVHGKK VRDDSKMLLQ SGISLDTLSD TLGFCLEPNP PQSTKPLPPE  420
DSDYVRPCNV PHTLTRCLPS PGKHAKPSNS VESDLDSKPS APNRAKTIYS RALIPVRPLH  480
VQALTVVPPR KTKRSVVAQR RIRRPFSVAE VEALVQAVER LGTGRWRDVK LRAFDNAKHR  540
TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLTAH AYWSQQQGKH LLLEGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-564905894103Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g010940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095062.10.0PREDICTED: telomere repeat-binding protein 5-like
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLR0GKR50.0R0GKR5_9BRAS; Uncharacterized protein
STRINGXP_010501357.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2