PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g011420.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 210aa    MW: 23527.4 Da    PI: 9.9372
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g011420.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.61.6e-141041911299
           NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      ++d k  ++P+ ri++i+++d+   +i  +a  l+ ka e+fi  ++  ++  + + k++ ++   ++++v++ + ++fl + vp++
  Csa03g011420.2 104 GVEDAKMFRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDERYEFLAEYVPEK 191
                     57899999*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.99E-19111190IPR009072Histone-fold
PfamPF008089.2E-22112175IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.6E-24113190IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVSSKKPKEK KAKSDAVNKT GGRSTRSSGS RTKKASNKVN IVKKEPEIHE ISDSSSSDSV  60
EEEAIRSDAP KKKSNGAVSK GRNGKRGEVI PTKTSKNREE DDGGVEDAKM FRFPMNRIRR  120
IMRSDNSAPQ IMQDAVFLVN KATEMFIERF SEEAYESSVQ DKKKFIHYKH LSSVVSNDER  180
YEFLAEYVPE KLKAEVALEE WEKGMTDAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g011420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0868150.0AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence.
GenBankBT0252660.0BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488220.11e-150PREDICTED: DNA polymerase epsilon subunit 4
TrEMBLQ0WP191e-104Q0WP19_ARATH; Uncharacterized protein At1g07980
STRINGXP_010488220.11e-149(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-84nuclear factor Y, subunit C10