PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g011780.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 491aa MW: 54683.5 Da PI: 8.6189

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g011780.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	186	227	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Csa03g011780.1 186 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 227 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-7	183	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	185	229	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	186	227	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	187	229	No hit	No description
CDD	cd14708	1.92E-22	187	239	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-7	188	231	No hit	No description
PROSITE pattern	PS00036	0	190	205	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.8E-30	268	343	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MANHRISEAT NHNHNHHHLP YSLIHGLNNN HPPPGFINQN GSSSFDFGEL EEAIVLQGVK 60 YRNDETKPPL LGGGGGATTL EMFPSWPIRT HQTLPTQESS KSGGESSDSG SANFSGKAES 120 QQPESPMSSK QNHHLMLQHH HHNKNNNMAN SSSTSGLPST SRTTLAPPKP SEDKRKATTS 180 GKQLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQELQRA RSQGLFMGGC 240 GPPGPNITSG AAMFDMEYGR WLEDDNRHMS EIRTGLQAHL SDNDLRSIVD GYIAHFDEIF 300 RLKAVAAKAD VFHLIIGTWM SPAERCFIWM AGFRPSDLIK ILVSQMDLLT EQQLMGIYSL 360 QHSSQQAEEA LSQGLEQLQQ SLIDTLAASP VMDGMQQMAV ALGKISNLEG FIRQADNLRQ 420 QTVHQLRRIL TVRQAARCFL VIGEYYGRLR ALSSLWLSRP RETLMSDETS CQTTTDLQIV 480 QSSRNHFSNF *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MANHRISEAT NHNHNHHHLP YSLIHGLNNN HPPPGFINQN GSSSFDFGEL EEAIVLQGVK  60
YRNDETKPPL LGGGGGATTL EMFPSWPIRT HQTLPTQESS KSGGESSDSG SANFSGKAES  120
QQPESPMSSK QNHHLMLQHH HHNKNNNMAN SSSTSGLPST SRTTLAPPKP SEDKRKATTS  180
GKQLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQELQRA RSQGLFMGGC  240
GPPGPNITSG AAMFDMEYGR WLEDDNRHMS EIRTGLQAHL SDNDLRSIVD GYIAHFDEIF  300
RLKAVAAKAD VFHLIIGTWM SPAERCFIWM AGFRPSDLIK ILVSQMDLLT EQQLMGIYSL  360
QHSSQQAEEA LSQGLEQLQQ SLIDTLAASP VMDGMQQMAV ALGKISNLEG FIRQADNLRQ  420
QTVHQLRRIL TVRQAARCFL VIGEYYGRLR ALSSLWLSRP RETLMSDETS CQTTTDLQIV  480
QSSRNHFSNF *

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g011780.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314757	0.0	AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBank	HQ132743	0.0	HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488718.1	0.0	PREDICTED: transcription factor TGA2.2-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1J3D5K8	0.0	A0A1J3D5K8_NOCCA; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRING	XP_010488718.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]