PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g011910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

YABBY

Protein Properties

Length: 189aa MW: 21055.9 Da PI: 9.5462

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g011910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	250.7	2.5e-77	2	164	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +v+ sse+vCyv+C+fC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++++ + ++l+ +++++s v++++ s+s+ Csa03g011910.1 2 SVDLSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSPPP---------INQDLQPYKQHITSSVTRKDFGSSSR 87 67889*******************************************9998877655.........56666666666666666655555555 PP YABBY 97 ssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++++ sen d+++pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Csa03g011910.1 88 STNNIsttlSENIDRDAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 164 5444434449******99.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.6E-71	6	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.05E-7	109	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSVDLSSERV CYVHCSFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTSPP 60 PINQDLQPYK QHITSSVTRK DFGSSSRSTN NISTTLSENI DRDAPRMPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKACNPE ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA 180 SQKSNGYC*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g011910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488902.1	1e-140	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-125	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	R0GKG1	1e-133	R0GKG1_9BRAS; Uncharacterized protein
STRING	XP_010488902.1	1e-139	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-119	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]