PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g013970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 154aa    MW: 17441.1 Da    PI: 9.5479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g013970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.67.9e-1222123294
                     EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      k lt sdv+ +++l+lpk+ +e++           +   + +++++++d +    s++v+l+  +k+g+y ++kGW+   + +gL  gDf+ ++
  Csa03g013970.1  22 TKRLTDSDVSIKAQLYLPKQLMEHFivpemgnelvqK--LAAGIDVKVRDVDRidHSYTVNLK-LRKDGQYHFGKGWQLLKNTKGLIKGDFIGLY 113
                     58899*****************777999887766432..23778888888776779*****96.55566899********************999 PP

                     E-SSSEE..EE CS
              B3  84 ldgrsefelvv 94 
                      d+   +e+++
  Csa03g013970.1 114 WDK-LAGEFKF 123
                     665.4444454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-1215118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1416129IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-1519124No hitNo description
SMARTSM010191.3E-821129IPR003340B3 DNA binding domain
PfamPF023622.2E-922122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAHSVNLELG LSQYEDDPWV LTKRLTDSDV SIKAQLYLPK QLMEHFIVPE MGNELVQKLA  60
AGIDVKVRDV DRIDHSYTVN LKLRKDGQYH FGKGWQLLKN TKGLIKGDFI GLYWDKLAGE  120
FKFKHLKTGS PHMPSSSGKG ETSTQEKEKQ ILK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g013970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491256.11e-109PREDICTED: B3 domain-containing protein At1g10455
SwissprotQ9XIK57e-55Y1045_ARATH; B3 domain-containing protein At1g10455
TrEMBLA0A178W4P22e-52A0A178W4P2_ARATH; Uncharacterized protein
STRINGXP_010491256.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1992934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.12e-08B3 family protein