PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g014000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 150aa    MW: 17018.2 Da    PI: 10.0699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g014000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05526223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++Cgk F ++  L  H++ H
  Csa03g014000.1  5 ECQYCGKEFANSQALGGHQNAH 26
                    7******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-5330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-6331No hitNo description
PROSITE profilePS5015711.801431IPR007087Zinc finger, C2H2
PfamPF139122.3E-5528IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MKRLECQYCG KEFANSQALG GHQNAHKKER LKKKRLQLQA RRASIGYYLT SHQQPITTAF  60
QGPYQTPSYC AFSSMHVNNN NQMGVYNEDW SPMSSQISFG SKNTCQDLNE QSGEMGKMYG  120
VRPNMIQFQR DLTSRSGSKR SIKSLDLHL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22301962, ECO:0000269|PubMed:22762888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g014000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and ethylene. {ECO:0000269|PubMed:22762888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934461e-144AB493446.1 Arabidopsis thaliana At1g10480 mRNA for hypothetical protein, partial cds, clone: RAAt1g10480.
GenBankAC0070671e-144AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankATHZFPE1e-144L39648.1 Arabidopsis thaliana zinc finger protein (ZFP5) mRNA, complete cds.
GenBankAY0863021e-144AY086302.1 Arabidopsis thaliana clone 23664 mRNA, complete sequence.
GenBankBT0248401e-144BT024840.1 Arabidopsis thaliana At1g10480 gene, complete cds.
GenBankCP0026841e-144CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458395.11e-109PREDICTED: zinc finger protein 5-like
SwissprotQ392649e-84ZFP5_ARATH; Zinc finger protein 5
TrEMBLD7KKR82e-84D7KKR8_ARALL; Zinc finger protein 5, ZFP5
STRINGXP_010458395.11e-108(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-79zinc finger protein 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Savage LJ,Imre KM,Hall DA,Last RL
    Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins.
    PLoS ONE, 2013. 8(9): p. e73291
    [PMID:24023856]
  3. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  4. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  5. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]