PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g017220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 452aa MW: 51437.2 Da PI: 6.8526

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g017220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.1	1.8e-26	132	213	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k +++++ s +++y++++e Csa03g017220.1 132 WVQDETRSLIMFRRGMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKYHDRGN---GSAKMSYYKEIE 213 ******************************************************************84...566899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-4	122	193	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.026	124	188	IPR017877	Myb-like domain
SMART	SM00717	0.0042	128	190	IPR001005	SANT/Myb domain
CDD	cd12203	1.53E-30	130	195	No hit	No description
Pfam	PF13837	4.7E-20	131	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
LTYQIVFGAL CVLTVVGTRN IISNCLSGDT AMFISDKSRP TDYYEDDNPN SSTATTRDMM 60 IDVTTTTTTT NEAVTDLQTH HHNNHNQNHN HHHHHHHHHL NQSQQQPQQI LLGESSSEDH 120 EVKAPKKRAE TWVQDETRSL IMFRRGMDSL FNTSKSNKHL WEQISSKMRE KGFDRSPTMC 180 TDKWRNLLKE FKKAKYHDRG NGSAKMSYYK EIEDILRERS KKVTVTTQFN KSPSTPPTTA 240 KVDSFMQFSD KGFDDASISF GSVEANGRPA LNLERRLDHD GHPLAITAVD AVAANGVTPW 300 NWRENPGNGG DGHGQPFGGR VITVKFGDYT RRIGVDGSAE AIKEAIRAAF GLRTRRAFWL 360 EDEDQIVRCL DRDMPLGNYL LHLDDGLAIR VCHYDESNQL PVHSEEKIFY TEEDYRDFLA 420 RRGWTCLQVD GFRNIENMDD LQPGAVYRGV R*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

LTYQIVFGAL CVLTVVGTRN IISNCLSGDT AMFISDKSRP TDYYEDDNPN SSTATTRDMM  60
IDVTTTTTTT NEAVTDLQTH HHNNHNQNHN HHHHHHHHHL NQSQQQPQQI LLGESSSEDH  120
EVKAPKKRAE TWVQDETRSL IMFRRGMDSL FNTSKSNKHL WEQISSKMRE KGFDRSPTMC  180
TDKWRNLLKE FKKAKYHDRG NGSAKMSYYK EIEDILRERS KKVTVTTQFN KSPSTPPTTA  240
KVDSFMQFSD KGFDDASISF GSVEANGRPA LNLERRLDHD GHPLAITAVD AVAANGVTPW  300
NWRENPGNGG DGHGQPFGGR VITVKFGDYT RRIGVDGSAE AIKEAIRAAF GLRTRRAFWL  360
EDEDQIVRCL DRDMPLGNYL LHLDDGLAIR VCHYDESNQL PVHSEEKIFY TEEDYRDFLA  420
RRGWTCLQVD GFRNIENMDD LQPGAVYRGV R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-54	126	211	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g017220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228305	0.0	AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495310.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	R0IPF9	0.0	R0IPF9_9BRAS; Uncharacterized protein
STRING	XP_010495310.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]