PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g020380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 133aa    MW: 15363.3 Da    PI: 4.2051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g020380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-181099198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    f+k++++    +s+ + +p  f  e+     + ++t+ + d sgr W+v++  +k++++++lt GW++Fv++n+L++g  + F +d +++f  +v +
  Csa03g020380.1 10 FVKAFIS--QKSSKSFAIPLGFN-EYfPD--PLPITVDVLDYSGRCWTVRM--KKRGEKVLLTLGWENFVRDNDLEDGKYLNFIYDCDRTF--YVII 97
                    7788844..4455558******8.66243..499*****************..*******************************9987776..8888 PP

                    E- CS
              B3 97 fr 98
                    f 
  Csa03g020380.1 98 FG 99
                    76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.4378101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-228103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-198103IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-151098IPR003340B3 DNA binding domain
SMARTSM010191.4E-1610101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAAISSEVRF VKAFISQKSS KSFAIPLGFN EYFPDPLPIT VDVLDYSGRC WTVRMKKRGE  60
KVLLTLGWEN FVRDNDLEDG KYLNFIYDCD RTFYVIIFGH DMCSEFRDFP QVVVDVDDYA  120
TGEDDEEVEE QK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A8e-5731034104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g020380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497982.14e-94PREDICTED: B3 domain-containing protein At1g16640-like
SwissprotQ9FX778e-65Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLD7KEH62e-65D7KEH6_ARALL; Transcriptional factor B3 family protein
STRINGXP_010497982.11e-93(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.13e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]