PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g021250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 600aa    MW: 67356.4 Da    PI: 7.4687
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g021250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-10486534348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E e+lv++v+++G g W+ I + +      Rt+ ++k++w++++
   Csa03g021250.1 486 AWTFTEVEKLVEGVTKYGVGKWSEIKKVLFssfVYRTPVDLKDKWRNLR 534
                      7****************************99**9*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.086479538IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-13481535IPR009057Homeodomain-like
SuperFamilySSF466891.42E-16481552IPR009057Homeodomain-like
SMARTSM007176.2E-10483536IPR001005SANT/Myb domain
CDDcd116606.07E-19485535No hitNo description
PfamPF002493.2E-7486534IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MFGTVEYYEE MFQDSTFLQS KSGSLSSTNQ TKNPVAYKLV RVAEDGRLVP ATDEEMLEVK  60
ELLEKNENDM PVLPDPRQTE DYIPDEGSPS QFLQLECFEG LYEPETAEAY TEIFDPGLFQ  120
SETAEAYPEN LNSRLEEVQS EALLREPVRF PSNGCSMNQC RDVSPYSNAT GSPKEPAACK  180
PEVSRVAGEI CLDDLSIKSL QDTFRAKFGR ETTCKSKQWL KRRITMGMIN SSIVPTTSLK  240
IYDNKLVGGG QDNAFSNDTV DEARAMESKD TPSSPDCLKG HSNDFGRSPV ETFVDHYSGN  300
EDFEGGYRSA KRVRKPSRRY IEEISKPNEK QQSDESMTPS KDQSSIQAVS SGGRVVITRM  360
ISLAGSRIQV PYVSHVRRSR PRENIMALGE FHSKSWEVKA TPDKSNLNLS PSRWNNDVKR  420
VSGVKSASRP VKKESSKDHL KPISNDVDQD YMESENLDSS GESSDENNRV DLPITQSGIR  480
RKHHRAWTFT EVEKLVEGVT KYGVGKWSEI KKVLFSSFVY RTPVDLKDKW RNLRRACFSQ  540
TPSNRMTKPA NLQGGPQKQG SMAIPTHIML QVRELAQKQS PVRKGSRVVV KGSSRNGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g021250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498099.10.0PREDICTED: uncharacterized protein LOC104775857
TrEMBLR0GPJ10.0R0GPJ1_9BRAS; Uncharacterized protein
STRINGXP_010498099.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.20.0TRF-like 3