PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g021330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 290aa    MW: 32195.8 Da    PI: 8.7098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g021330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r         +R+  ++k++w+++
   Csa03g021330.1  5 KLKWTAEEEEALLAGVRKHGPGKWKNILRDSEfdgqlSNRSNIDLKDKWRNL 56
                     689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.757162IPR017930Myb domain
SuperFamilySSF466895.89E-16359IPR009057Homeodomain-like
SMARTSM007173.6E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-14456IPR009057Homeodomain-like
PfamPF002494.9E-10556IPR001005SANT/Myb domain
CDDcd116602.64E-21756No hitNo description
SMARTSM005265.2E-15123188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.09E-15123202IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-11124192IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.049125193IPR005818Linker histone H1/H5, domain H15
PfamPF005387.2E-9127186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV RKHGPGKWKN ILRDSEFDGQ LSNRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFD LASAAAAATC NQIPNAIPSP VAKLIRNVSS ENIEEFCNIV  120
VDAKNVPRYD GMIFEALSAL TDVNGSDVSA IYNCIEQRHG APPNFRRMLS SRLRRLAAQG  180
KLEKTQNFYK MNDNSLIPRT PQVARPKEMN AKPRQTHSQG PSISQEMVGE ASITAAYKLV  240
EVENKLDVVK GSSEEIERMM NLAKHAEYML VIAREMHEEC CQGNIMFLD*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g021330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498113.10.0PREDICTED: telomere repeat-binding factor 4-like isoform X4
SwissprotF4I7L11e-139TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLR0GM011e-158R0GM01_9BRAS; Uncharacterized protein
STRINGXP_010498110.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-140MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]