PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g022670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 232aa MW: 26364.1 Da PI: 8.1989

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g022670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.4e-26	96	145	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e +s yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl Csa03g022670.1 96 KTLSKEIISLYFYMPITQAAKELNIGLTLLKKRCRELGIQRWPHRKLMSL 145 899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.723	76	165	IPR003035	RWP-RK domain
Pfam	PF02042	5.3E-21	97	145	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
DLANLFFGLE DDFPPSASSF LALPDYLPSA SSFLALPDLD PISIVSLDDL RSGYGSVSWT 60 EEESMLDLDL EKKSETISNK KRRCREECVS SCSVSKTLSK EIISLYFYMP ITQAAKELNI 120 GLTLLKKRCR ELGIQRWPHR KLMSLQKLIS NVKELQKMEG EENEDKLRNA LEKLEKEKET 180 IEKLPDLKFE DKTKRLRQAC FKANHKRKRR HGMSTSFTSS SSSSSVSGLS DS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g022670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011809	1e-100	AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBank	CP002684	1e-100	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010501518.1	1e-152	PREDICTED: protein RKD1-like
Swissprot	Q9M9U9	1e-113	RKD1_ARATH; Protein RKD1
TrEMBL	D7KH70	1e-114	D7KH70_ARALL; RWP-RK domain-containing protein (Fragment)
STRING	XP_010501518.1	1e-152	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-85	RWP-RK domain-containing protein