PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g024540.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 199aa MW: 22492 Da PI: 6.6318

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g024540.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.4	3.8e-21	79	139	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ Csa03g024540.1 79 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 139 89***************99************************************97 PP
2	Wus_type_Homeobox	102	4e-33	78	141	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq Csa03g024540.1 78 SRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 141 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-16	73	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	75	140	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-19	75	145	IPR009057	Homeodomain-like
SMART	SM00389	8.7E-14	77	144	IPR001356	Homeobox domain
Pfam	PF00046	8.8E-19	79	139	IPR001356	Homeobox domain
CDD	cd00086	3.94E-14	79	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MEREMQNDAY NGRGRVMTEE QMEILRKQIA VYAVICDQLV LLHNSLSSNH PFSSGMRPMV 60 GGYFDPMGSS SNSHRISSRH RWTPTSTQLQ ILESIYEEGS GTPNRRRIRE IATELSEHGQ 120 ITETNVYNWF QNRRARSKRK QPQTTTTANS QADDVAVTTE ERRSCGDSGG LESYEHILFP 180 SPDLGIEHLL SIGKFLES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g024540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441297	0.0	AJ441297.1 Arabidopsis thaliana mRNA for homeodomain protein PALE-2 (pale-2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010498509.1	1e-147	PREDICTED: WUSCHEL-related homeobox 14-like
Swissprot	Q9LM84	1e-133	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	R0I890	1e-132	R0I890_9BRAS; Uncharacterized protein
STRING	XP_010498509.1	1e-147	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-117	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]