PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g024550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 116aa    MW: 13131.5 Da    PI: 5.2177
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g024550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.81.2e-1024533257
                    HHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox 32 eLAkkl....gLterqVkvWFqNrRakekk 57
                    ++A++l    ++ e++V++WFqNrRa+ k+
  Csa03g024550.1 24 QIAAELsehgQIMEKNVYNWFQNRRARSKR 53
                    5666666666******************97 PP
2Wus_type_Homeobox58.31.9e-197551765
  Wus_type_Homeobox 17 eelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +  y+  + t ++ e+ +i+aeL+e+G+i++kNV++WFQNr+aR+++kq
     Csa03g024550.1  7 NGTYDGRVMTEEQMETLQIAAELSEHGQIMEKNVYNWFQNRRARSKRKQ 55
                       55688888899999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000866.33E-61655No hitNo description
SuperFamilySSF466894.28E-92158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-82257IPR009057Homeodomain-like
PROSITE profilePS5007110.2032454IPR001356Homeobox domain
PfamPF000463.2E-82453IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEQGSLNGTY DGRVMTEEQM ETLQIAAELS EHGQIMEKNV YNWFQNRRAR SKRKQPQTTT  60
VTGPTGDAAV TTEERSYGDS GGFESYEHIL FPSPDRGIEH LLSREKFMEN KFHTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g024550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498511.11e-62PREDICTED: putative WUSCHEL-related homeobox 10
SwissprotQ9LM849e-44WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBLR0IAB35e-51R0IAB3_9BRAS; Uncharacterized protein
STRINGXP_010498511.15e-62(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.14e-35WUSCHEL related homeobox 14
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]