PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g026490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 76aa MW: 8762.99 Da PI: 8.8783

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g026490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.4	5.7e-12	14	47	1	36
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 +g+WT+eEd+llvd+++++G g+W++ +r R+ Csa03g026490.1 14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAE--RS 47 79************************999775..55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-13	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.88E-9	9	45	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.505	9	57	IPR017930	Myb domain
SMART	SM00717	0.0018	13	55	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-9	14	42	IPR001005	SANT/Myb domain
CDD	cd00167	3.93E-6	16	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAERSKYS QARRDIQFIG 60 NKGLEEVLYN VWHLA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g026490.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006551	2e-59	AC006551.6 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence.
GenBank	AY072543	2e-59	AY072543.1 Arabidopsis thaliana At1g22640/F12K8.1 mRNA, complete cds.
GenBank	BT000841	2e-59	BT000841.1 Arabidopsis thaliana At1g22640/F12K8.1 mRNA, complete cds.
GenBank	CP002684	2e-59	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T22J18	2e-59	AC003979.2 Arabidopsis thaliana chromosome 1 BAC T22J18 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595395.1	3e-25	PREDICTED: transcription factor MYB3-like
Swissprot	Q9S9K9	4e-26	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A087HQF5	7e-24	A0A087HQF5_ARAAL; Uncharacterized protein
TrEMBL	A0A3P6ELP4	8e-24	A0A3P6ELP4_BRAOL; Uncharacterized protein
STRING	Bra012337.1-P	2e-24	(Brassica rapa)
STRING	Bra024526.1-P	2e-24	(Brassica rapa)
STRING	A0A087HQF5	1e-24	(Arabis alpina)
STRING	fgenesh2_kg.1__2457__AT1G22640.1	2e-24	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-28	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]