PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g028420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 227aa    MW: 26446.7 Da    PI: 6.9516
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g028420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1766119356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+ ql+ Lee F++++ +  +++  LA+klgL+ +qV vWFqNrRa++k
  Csa03g028420.1  66 KKRKLTPIQLRLLEESFKEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYK 119
                     56699************************************************9 PP
2HD-ZIP_I/II114.27.8e-3766156292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkr+l+  q++lLEesF+ee++Lep+rK  la++Lglqp qvavWFqnrRAR+ktkqlE+dy++Lk++y +lk+e + +  ++++L+++++
  Csa03g028420.1  66 KKRKLTPIQLRLLEESFKEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDYDSLKASYAKLKTEWDVIYLQNQNLKNKVA 156
                     9**************************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1848123IPR009057Homeodomain-like
PROSITE profilePS5007116.56861121IPR001356Homeobox domain
SMARTSM003898.0E-1764125IPR001356Homeobox domain
PfamPF000465.9E-1566119IPR001356Homeobox domain
CDDcd000868.34E-1566122No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1868129IPR009057Homeodomain-like
PRINTSPR000317.1E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000317.1E-5101117IPR000047Helix-turn-helix motif
PfamPF021831.3E-12121162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENSDTDSEV FFWFQNQSHG HKFPPSCFPS SAHSAYYGSS SMSNTQTNTV DEEDVCESNM  60
KREITKKRKL TPIQLRLLEE SFKEEKRLEP DRKLWLAEKL GLQPSQVAVW FQNRRARYKT  120
KQLEHDYDSL KASYAKLKTE WDVIYLQNQN LKNKVALLKE KLRMQENLEP QAMETKKLEK  180
EGSSVKSYNT KYSEEEEGLG NQYSFPELAV LGLYYDSTLT TSNLRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARYKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g028420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0003481e-118AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence.
GenBankCP0026841e-118CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498975.11e-168PREDICTED: homeobox-leucine zipper protein ATHB-54-like
SwissprotP0CJ651e-136ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLA0A178WF451e-133A0A178WF45_ARATH; HB54
STRINGXP_010498975.11e-167(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-127HD-ZIP family protein