PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g029810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 167aa    MW: 18810.2 Da    PI: 9.8314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g029810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00031361541230
                     HHHHHHHHHHHHHCTSCCC CS
             HLH  12 RRdriNsafeeLrellPka 30 
                     RR++iN+++  L++l+P +
  Csa03g029810.1 136 RREKINERLKCLQDLVPGC 154
                     9****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-5115156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MARFEPYNLY NIGPNPFLAR TNQNPELINL DSPASTPSRF MLFSDGALVD AHPNSSHFSQ  60
NLLHELAGDS GRKGNKGESG SKRRRKRLEE VETMNEDETH QKPKDVVHVR AKRGQATDSH  120
SLAERVILQI HTINVRREKI NERLKCLQDL VPGCYKVIKH FASTTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g029810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499122.11e-104PREDICTED: transcription factor bHLH75-like isoform X1
SwissprotA4D9982e-65BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A087HQX72e-72A0A087HQX7_ARAAL; Uncharacterized protein
STRINGXP_010499122.11e-103(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.14e-60bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]