PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g030580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 391aa    MW: 43355.4 Da    PI: 8.3578
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g030580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP828.2e-26171245177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq++gC+ dls+ak+yhr+h+vCe+hsk p+v+v+g+e rfCqqCs    ls +  +  +  +rL++hn+rrrk+q
  Csa03g030580.1 171 RCQIDGCDLDLSSAKDYHRKHRVCEKHSKFPKVTVRGIELRFCQQCSMLS-LSLM-RRSEAAAKRLSHHNARRRKPQ 245
                     6**********************************************864.4443.44556789***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-23164217IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.957169244IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-25170245IPR004333Transcription factor, SBP-box
PfamPF031105.3E-19172243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVSSSQWDWE NLIMSNPSKS ENEKKQQSTE WEFEKGEGIE SIIPDFLGFE RVSSGSATSF  60
WNTAVSKSSQ STSINSSSTE VKQCKLASQS SPGDSCSNID FAQVKASTAL EVSVASAESD  120
LCLKLGKRTY SEEFWGRNNN DISAVSMKLL TPSVVARKKS KSCGQSMQVP RCQIDGCDLD  180
LSSAKDYHRK HRVCEKHSKF PKVTVRGIEL RFCQQCSMLS LSLMRRSEAA AKRLSHHNAR  240
RRKPQGLYPL NPERVYDRRQ HTSMLWNGLS LNTRSEETYA WGTTCETKPT QMESGFTLSF  300
QRGNGSEEQL FASSSRSFSV FQTSGGLSAG KHNIQLPDKD LGECSGGLHE TQDFHSALSL  360
LSTSSDPRGT KHNPMVEPQP IFGTFPTHFI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-13172217651squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g030580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116370.0AJ011637.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 10.
GenBankAY1420280.0AY142028.1 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460488.10.0PREDICTED: squamosa promoter-binding-like protein 10
RefseqXP_010460489.10.0PREDICTED: squamosa promoter-binding-like protein 10
RefseqXP_010460491.10.0PREDICTED: squamosa promoter-binding-like protein 10
RefseqXP_010460492.10.0PREDICTED: squamosa promoter-binding-like protein 10
SwissprotQ8S9L00.0SPL10_ARATH; Squamosa promoter-binding-like protein 10
TrEMBLR0GPP40.0R0GPP4_9BRAS; Uncharacterized protein
STRINGXP_010460488.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.40.0squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu N,Niu QW,Ng KH,Chua NH
    The role of miR156/SPLs modules in Arabidopsis lateral root development.
    Plant J., 2015. 83(4): p. 673-85
    [PMID:26096676]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Gao R,Wang Y,Gruber MY,Hannoufa A
    miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
    Front Plant Sci, 2017. 8: p. 2226
    [PMID:29354153]
  5. Dotto M,Gómez MS,Soto MS,Casati P
    UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
    Plant Cell Environ., 2018. 41(6): p. 1394-1406
    [PMID:29447428]