PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g031770.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 1722aa MW: 193678 Da PI: 4.8884

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g031770.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	41	96	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ +++yps+++r++L++kl+Lt+rq ++WF+ rR k+kk Csa03g031770.2 41 PKRQMKTPFQLETLEKVYSEEKYPSEATRADLSDKLNLTDRQLQMWFCHRRLKDKK 96 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-19	23	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-16	32	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	37	97	IPR001356	Homeobox domain
SMART	SM00389	5.0E-18	39	101	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-17	41	96	IPR001356	Homeobox domain
CDD	cd00086	1.23E-14	42	96	No hit	No description
PROSITE profile	PS50827	18.031	558	617	IPR018501	DDT domain
SMART	SM00571	4.6E-24	558	617	IPR018501	DDT domain
Pfam	PF02791	9.3E-18	559	614	IPR018501	DDT domain
Pfam	PF05066	9.1E-16	740	807	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.8E-7	940	981	IPR028942	WHIM1 domain
Pfam	PF15613	4.5E-13	1115	1187	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1722 aa Download sequence Send to blast
MEMGSDEEED QIRSVADVVA GSNNNKKKNK IDNSSSSSAK PKRQMKTPFQ LETLEKVYSE 60 EKYPSEATRA DLSDKLNLTD RQLQMWFCHR RLKDKKDDQS QSKTPVKPAV PAAVRPPPPA 120 FASSVNDLPP ARSVPEQDSG SGSDSGSGCS PYSDSRRNFA SGSSSSRAEL DEYETMVKPS 180 YEPRLSAMVR RAIVCIEAQL GEPLRDDGPI LGMEFDPLPP GAFGSPIAMQ KHLLHPYESK 240 MYEPHDVRPR RSQAAARSFH EQQSLDDPSS FTPEMYGRYS ENHAHGMDYE IARPRSSSFM 300 HENGSLPRSY GTPGYVSRNC STSQQDMPSP IVASAHRGDR FLMEKDSSVL GTEDPYMLSD 360 GVHKSNDVHR KGKIHDVRLG RGSETRENRG PKDLEKLEIQ KKKNEERMRK EMERNERERR 420 KEEERLMRER IKEEERLQRE QRREMERREK FLQRENERAE KKKQKEEIRR EKDAIRRKIA 480 IEKATARRIA KESMDLIEDE QLELMELAAI SKGLPSVLQL DHDTLQNLEL YRDSLSTFPP 540 KGLQLKMPFA ISPWKDSDES VGNLLMVWRF LTSFSDVLDL WPFTLDEFIQ AFHDYDSRLL 600 GEIHVTLLRS IIRDIEDVAR TPFSGIGNNQ YTTANPEGGH PQIVEGAYAW GFDIRSWKKN 660 LNPLTWPEIL RQLALSTGLG PRLKKKSSRF THTGDKDEAK GCEDIISTIR SGSAAESAFA 720 LMREKGLLAP RKSRHRLTPG TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT 780 PEASISVALT RDVKLFERIA PSTYCVRAPY VKDPADGEAI LADARKKIRA FESGLTGPED 840 VNDLERDEDF EIDIDEDPEV DDLATLASAS KSADLDEANV LSGKGGDTMF CDVKAGVKSE 900 IEKEFSSPPP SSIKSIAPQH NERLKDTAVG CVDAMVDESN EGQSWIQGLT EGDYCHLSVE 960 ERLNALVALV GIANEGNSIR AGLEDRMEAA NSLKKQMWAE AQLDNSCMRD VLKLDFQNLA 1020 SSKTESTMGL PIIQSSNRER DNFGGDPSEL LDEKKPLEVV SNDLQKSTAE RGLINQEAII 1080 SQENCSFQQG YVSKRSRSQL KSYIGHKAEE VYPYRSLPVG QDRRHNRYWL FAASASKSDP 1140 SSGLLFVELH DGKWLLIDSE EAFDTLVASL DMRGIRESHL RIMLQKIEGS FKENARKNMK 1200 LARNPFLKEK SVMNHSPTDS VSPSSAVSGS NSDSMETSNS IRVELGRNDT EKKSLSKRFH 1260 DFQRWMWTET YSSLPSCAKK YGKKRSELLA TCALCVASYL SEYTHCTSCH QRLDMVDDSE 1320 ILDSGLTVSP LPFGVRLLKP LLVFLEASIP DEALESFWTE DKRKIWGFRL NASSSPEEAL 1380 QVLTTLETAI KKEYLSSNFM SAKELLGVGD ADADDPGSVD VLPWIPKTVS AVALRLSELD 1440 ASIIYVKPEK PDLIPEDETE QISLFPGDSL FKGKGPREQE DQDEVVPNLG NRRSNKRARV 1500 SLGSGSNKKV KRKKAQGGPN RFVVSQRNVA VDNNLMSMEL NHQIPGRGKR TVRKRPERIN 1560 EENDHLVNRM ADIVRPKTQE VEEDEEEEEQ TFRDIDEDWA AGETPREMDE DWANETPNRM 1620 TPMQVDDESD NSVGVESEDD DVDGQFVDYS QRNKWGLDWN SNANEAAMED EEEEEVVGVE 1680 RVEGEDDAEI SESSEDDDDV PANNAANNYD RESEGYSSSD S*

Sequence ? help Back to Top

Protein Sequence Length: 1722 aa Download sequence Send to blast

MEMGSDEEED QIRSVADVVA GSNNNKKKNK IDNSSSSSAK PKRQMKTPFQ LETLEKVYSE  60
EKYPSEATRA DLSDKLNLTD RQLQMWFCHR RLKDKKDDQS QSKTPVKPAV PAAVRPPPPA  120
FASSVNDLPP ARSVPEQDSG SGSDSGSGCS PYSDSRRNFA SGSSSSRAEL DEYETMVKPS  180
YEPRLSAMVR RAIVCIEAQL GEPLRDDGPI LGMEFDPLPP GAFGSPIAMQ KHLLHPYESK  240
MYEPHDVRPR RSQAAARSFH EQQSLDDPSS FTPEMYGRYS ENHAHGMDYE IARPRSSSFM  300
HENGSLPRSY GTPGYVSRNC STSQQDMPSP IVASAHRGDR FLMEKDSSVL GTEDPYMLSD  360
GVHKSNDVHR KGKIHDVRLG RGSETRENRG PKDLEKLEIQ KKKNEERMRK EMERNERERR  420
KEEERLMRER IKEEERLQRE QRREMERREK FLQRENERAE KKKQKEEIRR EKDAIRRKIA  480
IEKATARRIA KESMDLIEDE QLELMELAAI SKGLPSVLQL DHDTLQNLEL YRDSLSTFPP  540
KGLQLKMPFA ISPWKDSDES VGNLLMVWRF LTSFSDVLDL WPFTLDEFIQ AFHDYDSRLL  600
GEIHVTLLRS IIRDIEDVAR TPFSGIGNNQ YTTANPEGGH PQIVEGAYAW GFDIRSWKKN  660
LNPLTWPEIL RQLALSTGLG PRLKKKSSRF THTGDKDEAK GCEDIISTIR SGSAAESAFA  720
LMREKGLLAP RKSRHRLTPG TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT  780
PEASISVALT RDVKLFERIA PSTYCVRAPY VKDPADGEAI LADARKKIRA FESGLTGPED  840
VNDLERDEDF EIDIDEDPEV DDLATLASAS KSADLDEANV LSGKGGDTMF CDVKAGVKSE  900
IEKEFSSPPP SSIKSIAPQH NERLKDTAVG CVDAMVDESN EGQSWIQGLT EGDYCHLSVE  960
ERLNALVALV GIANEGNSIR AGLEDRMEAA NSLKKQMWAE AQLDNSCMRD VLKLDFQNLA  1020
SSKTESTMGL PIIQSSNRER DNFGGDPSEL LDEKKPLEVV SNDLQKSTAE RGLINQEAII  1080
SQENCSFQQG YVSKRSRSQL KSYIGHKAEE VYPYRSLPVG QDRRHNRYWL FAASASKSDP  1140
SSGLLFVELH DGKWLLIDSE EAFDTLVASL DMRGIRESHL RIMLQKIEGS FKENARKNMK  1200
LARNPFLKEK SVMNHSPTDS VSPSSAVSGS NSDSMETSNS IRVELGRNDT EKKSLSKRFH  1260
DFQRWMWTET YSSLPSCAKK YGKKRSELLA TCALCVASYL SEYTHCTSCH QRLDMVDDSE  1320
ILDSGLTVSP LPFGVRLLKP LLVFLEASIP DEALESFWTE DKRKIWGFRL NASSSPEEAL  1380
QVLTTLETAI KKEYLSSNFM SAKELLGVGD ADADDPGSVD VLPWIPKTVS AVALRLSELD  1440
ASIIYVKPEK PDLIPEDETE QISLFPGDSL FKGKGPREQE DQDEVVPNLG NRRSNKRARV  1500
SLGSGSNKKV KRKKAQGGPN RFVVSQRNVA VDNNLMSMEL NHQIPGRGKR TVRKRPERIN  1560
EENDHLVNRM ADIVRPKTQE VEEDEEEEEQ TFRDIDEDWA AGETPREMDE DWANETPNRM  1620
TPMQVDDESD NSVGVESEDD DVDGQFVDYS QRNKWGLDWN SNANEAAMED EEEEEVVGVE  1680
RVEGEDDAEI SESSEDDDDV PANNAANNYD RESEGYSSSD S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	96	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g031770.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010155	0.0	AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499372.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	D7KCW8	0.0	D7KCW8_ARALL; HB-1
STRING	XP_010499372.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1